miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11605 3' -58.7 NC_003085.1 + 29981 0.7 0.303725
Target:  5'- aGCagUCAuCCaCCGGAUGGGGAGCGgCCc -3'
miRNA:   3'- gCGg-AGU-GG-GGCCUGCUCUUCGCaGG- -5'
11605 3' -58.7 NC_003085.1 + 41013 0.7 0.326325
Target:  5'- uCGUCaUCGCCgUGGGCGucgcuGGCGUCCu -3'
miRNA:   3'- -GCGG-AGUGGgGCCUGCucu--UCGCAGG- -5'
11605 3' -58.7 NC_003085.1 + 21706 0.7 0.326325
Target:  5'- cCGCUUCGCCUCGGACauccAGCG-CCu -3'
miRNA:   3'- -GCGGAGUGGGGCCUGcucuUCGCaGG- -5'
11605 3' -58.7 NC_003085.1 + 21508 0.7 0.33413
Target:  5'- cCGCCccaCACCgCGGACGAGuagauGGGCaaGUCCc -3'
miRNA:   3'- -GCGGa--GUGGgGCCUGCUC-----UUCG--CAGG- -5'
11605 3' -58.7 NC_003085.1 + 18707 0.7 0.33413
Target:  5'- gGCC-CGCCCCGccugacgaGACGGGAcGCG-CCu -3'
miRNA:   3'- gCGGaGUGGGGC--------CUGCUCUuCGCaGG- -5'
11605 3' -58.7 NC_003085.1 + 10241 0.7 0.342072
Target:  5'- aCGCCgUAgCCUGGcCGAGggG-GUCCg -3'
miRNA:   3'- -GCGGaGUgGGGCCuGCUCuuCgCAGG- -5'
11605 3' -58.7 NC_003085.1 + 15628 0.69 0.350149
Target:  5'- gGCCgguggCCGGGCGGaGAGCGUCCa -3'
miRNA:   3'- gCGGaguggGGCCUGCUcUUCGCAGG- -5'
11605 3' -58.7 NC_003085.1 + 44348 0.69 0.350149
Target:  5'- aGCCuUCGCCCgCGGcgacGCGAGAAacGCcUCCa -3'
miRNA:   3'- gCGG-AGUGGG-GCC----UGCUCUU--CGcAGG- -5'
11605 3' -58.7 NC_003085.1 + 47109 0.69 0.35836
Target:  5'- gGCCUCGCacugcgccuCCCGGAUGucgcaaccgauGAAGCGgcggCCg -3'
miRNA:   3'- gCGGAGUG---------GGGCCUGCu----------CUUCGCa---GG- -5'
11605 3' -58.7 NC_003085.1 + 1515 0.69 0.366706
Target:  5'- gCGCCUCacgGCCgCCaGGCGuGAcuccAGCGUCUg -3'
miRNA:   3'- -GCGGAG---UGG-GGcCUGCuCU----UCGCAGG- -5'
11605 3' -58.7 NC_003085.1 + 3467 0.69 0.366706
Target:  5'- cCGUCgUCACCCUGuGGgGAGAGGCGcgcaucugCCg -3'
miRNA:   3'- -GCGG-AGUGGGGC-CUgCUCUUCGCa-------GG- -5'
11605 3' -58.7 NC_003085.1 + 47708 0.69 0.366706
Target:  5'- cCGUCUC-CCCauaGGGCGGGuccgugacgauGGCGUCUa -3'
miRNA:   3'- -GCGGAGuGGGg--CCUGCUCu----------UCGCAGG- -5'
11605 3' -58.7 NC_003085.1 + 41991 0.69 0.372627
Target:  5'- aCGCCUCgccguguuccuGCCCCggcggcgucggcacGGACGAG-GGCG-CCu -3'
miRNA:   3'- -GCGGAG-----------UGGGG--------------CCUGCUCuUCGCaGG- -5'
11605 3' -58.7 NC_003085.1 + 28638 0.69 0.375184
Target:  5'- gGCCUUucgauACCCCuuccuggaGGCGGGGaagGGCGUCCu -3'
miRNA:   3'- gCGGAG-----UGGGGc-------CUGCUCU---UCGCAGG- -5'
11605 3' -58.7 NC_003085.1 + 24615 0.69 0.383794
Target:  5'- uGCCg-GCCCa-GGCGAGAaucugcgccucGGCGUCCu -3'
miRNA:   3'- gCGGagUGGGgcCUGCUCU-----------UCGCAGG- -5'
11605 3' -58.7 NC_003085.1 + 875 0.69 0.383794
Target:  5'- gCGCCU--UCCCGG-CGGu-GGCGUCCg -3'
miRNA:   3'- -GCGGAguGGGGCCuGCUcuUCGCAGG- -5'
11605 3' -58.7 NC_003085.1 + 40734 0.68 0.392533
Target:  5'- uCGCCg-GCgCCGGAgGcacuGGAGGUGUCCu -3'
miRNA:   3'- -GCGGagUGgGGCCUgC----UCUUCGCAGG- -5'
11605 3' -58.7 NC_003085.1 + 2423 0.68 0.392533
Target:  5'- uGaCCUCACCCUggGGugGuagauGGAGCG-CCu -3'
miRNA:   3'- gC-GGAGUGGGG--CCugCu----CUUCGCaGG- -5'
11605 3' -58.7 NC_003085.1 + 18946 0.68 0.410397
Target:  5'- uCGCCUacaggGCCCCGcGACGGuGgcGCGcuUCCu -3'
miRNA:   3'- -GCGGAg----UGGGGC-CUGCU-CuuCGC--AGG- -5'
11605 3' -58.7 NC_003085.1 + 11300 0.68 0.428756
Target:  5'- -aCCUgCGCCgCGG-CGGGGAGCG-CCa -3'
miRNA:   3'- gcGGA-GUGGgGCCuGCUCUUCGCaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.