miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11605 3' -58.7 NC_003085.1 + 20827 0.67 0.486583
Target:  5'- aCGCC--AUCCUGGAUGAGGcgaccGGCG-CCg -3'
miRNA:   3'- -GCGGagUGGGGCCUGCUCU-----UCGCaGG- -5'
11605 3' -58.7 NC_003085.1 + 405 0.67 0.47668
Target:  5'- gCGCCUgCGcuCCCUGGACGccagucucGGccGCGUCUa -3'
miRNA:   3'- -GCGGA-GU--GGGGCCUGC--------UCuuCGCAGG- -5'
11605 3' -58.7 NC_003085.1 + 41160 0.67 0.47668
Target:  5'- uGCCUCcaacggcuaCCUGGGCaaGGGGcuccAGCGUCCa -3'
miRNA:   3'- gCGGAGug-------GGGCCUG--CUCU----UCGCAGG- -5'
11605 3' -58.7 NC_003085.1 + 42479 0.67 0.466877
Target:  5'- gGCgUCAUCuCCGaGACGuGAGGCGaaucgCCg -3'
miRNA:   3'- gCGgAGUGG-GGC-CUGCuCUUCGCa----GG- -5'
11605 3' -58.7 NC_003085.1 + 42219 0.67 0.466877
Target:  5'- aGCCUguCCCCGGGCuguccguaGGGGcAGCGcugcgCCa -3'
miRNA:   3'- gCGGAguGGGGCCUG--------CUCU-UCGCa----GG- -5'
11605 3' -58.7 NC_003085.1 + 9441 0.67 0.466877
Target:  5'- aGUC-CGgCCCGuACGGGAAGCGggCCg -3'
miRNA:   3'- gCGGaGUgGGGCcUGCUCUUCGCa-GG- -5'
11605 3' -58.7 NC_003085.1 + 46100 0.67 0.45718
Target:  5'- gGUCUCauuggGCUCaCGGGCGucgGGGAGCGUCg -3'
miRNA:   3'- gCGGAG-----UGGG-GCCUGC---UCUUCGCAGg -5'
11605 3' -58.7 NC_003085.1 + 43747 0.67 0.45718
Target:  5'- aGCCgggucCGCCCCGGugGuGGgcGCGggCUu -3'
miRNA:   3'- gCGGa----GUGGGGCCugC-UCuuCGCa-GG- -5'
11605 3' -58.7 NC_003085.1 + 18436 0.67 0.447591
Target:  5'- gGCCUUugCCCGcGuCGuGGA-CGUCCu -3'
miRNA:   3'- gCGGAGugGGGC-CuGCuCUUcGCAGG- -5'
11605 3' -58.7 NC_003085.1 + 7278 0.67 0.447591
Target:  5'- gCGCCUCAUgCCGaggcuggcugcGACGGGAga-GUCCa -3'
miRNA:   3'- -GCGGAGUGgGGC-----------CUGCUCUucgCAGG- -5'
11605 3' -58.7 NC_003085.1 + 43397 0.67 0.444737
Target:  5'- cCGCUggugCAUCCCGGugGggcucgggagaaucAGGucauccuggcgcGGCGUCCg -3'
miRNA:   3'- -GCGGa---GUGGGGCCugC--------------UCU------------UCGCAGG- -5'
11605 3' -58.7 NC_003085.1 + 32539 0.68 0.428756
Target:  5'- gGCCUUGCCCuccaCGGGCGGGGgcuGGgGUgCg -3'
miRNA:   3'- gCGGAGUGGG----GCCUGCUCU---UCgCAgG- -5'
11605 3' -58.7 NC_003085.1 + 11300 0.68 0.428756
Target:  5'- -aCCUgCGCCgCGG-CGGGGAGCG-CCa -3'
miRNA:   3'- gcGGA-GUGGgGCCuGCUCUUCGCaGG- -5'
11605 3' -58.7 NC_003085.1 + 18946 0.68 0.410397
Target:  5'- uCGCCUacaggGCCCCGcGACGGuGgcGCGcuUCCu -3'
miRNA:   3'- -GCGGAg----UGGGGC-CUGCU-CuuCGC--AGG- -5'
11605 3' -58.7 NC_003085.1 + 2423 0.68 0.392533
Target:  5'- uGaCCUCACCCUggGGugGuagauGGAGCG-CCu -3'
miRNA:   3'- gC-GGAGUGGGG--CCugCu----CUUCGCaGG- -5'
11605 3' -58.7 NC_003085.1 + 40734 0.68 0.392533
Target:  5'- uCGCCg-GCgCCGGAgGcacuGGAGGUGUCCu -3'
miRNA:   3'- -GCGGagUGgGGCCUgC----UCUUCGCAGG- -5'
11605 3' -58.7 NC_003085.1 + 875 0.69 0.383794
Target:  5'- gCGCCU--UCCCGG-CGGu-GGCGUCCg -3'
miRNA:   3'- -GCGGAguGGGGCCuGCUcuUCGCAGG- -5'
11605 3' -58.7 NC_003085.1 + 24615 0.69 0.383794
Target:  5'- uGCCg-GCCCa-GGCGAGAaucugcgccucGGCGUCCu -3'
miRNA:   3'- gCGGagUGGGgcCUGCUCU-----------UCGCAGG- -5'
11605 3' -58.7 NC_003085.1 + 28638 0.69 0.375184
Target:  5'- gGCCUUucgauACCCCuuccuggaGGCGGGGaagGGCGUCCu -3'
miRNA:   3'- gCGGAG-----UGGGGc-------CUGCUCU---UCGCAGG- -5'
11605 3' -58.7 NC_003085.1 + 41991 0.69 0.372627
Target:  5'- aCGCCUCgccguguuccuGCCCCggcggcgucggcacGGACGAG-GGCG-CCu -3'
miRNA:   3'- -GCGGAG-----------UGGGG--------------CCUGCUCuUCGCaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.