Results 41 - 60 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11605 | 3' | -58.7 | NC_003085.1 | + | 1515 | 0.69 | 0.366706 |
Target: 5'- gCGCCUCacgGCCgCCaGGCGuGAcuccAGCGUCUg -3' miRNA: 3'- -GCGGAG---UGG-GGcCUGCuCU----UCGCAGG- -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 47708 | 0.69 | 0.366706 |
Target: 5'- cCGUCUC-CCCauaGGGCGGGuccgugacgauGGCGUCUa -3' miRNA: 3'- -GCGGAGuGGGg--CCUGCUCu----------UCGCAGG- -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 3467 | 0.69 | 0.366706 |
Target: 5'- cCGUCgUCACCCUGuGGgGAGAGGCGcgcaucugCCg -3' miRNA: 3'- -GCGG-AGUGGGGC-CUgCUCUUCGCa-------GG- -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 47109 | 0.69 | 0.35836 |
Target: 5'- gGCCUCGCacugcgccuCCCGGAUGucgcaaccgauGAAGCGgcggCCg -3' miRNA: 3'- gCGGAGUG---------GGGCCUGCu----------CUUCGCa---GG- -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 15628 | 0.69 | 0.350149 |
Target: 5'- gGCCgguggCCGGGCGGaGAGCGUCCa -3' miRNA: 3'- gCGGaguggGGCCUGCUcUUCGCAGG- -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 44348 | 0.69 | 0.350149 |
Target: 5'- aGCCuUCGCCCgCGGcgacGCGAGAAacGCcUCCa -3' miRNA: 3'- gCGG-AGUGGG-GCC----UGCUCUU--CGcAGG- -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 10241 | 0.7 | 0.342072 |
Target: 5'- aCGCCgUAgCCUGGcCGAGggG-GUCCg -3' miRNA: 3'- -GCGGaGUgGGGCCuGCUCuuCgCAGG- -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 21508 | 0.7 | 0.33413 |
Target: 5'- cCGCCccaCACCgCGGACGAGuagauGGGCaaGUCCc -3' miRNA: 3'- -GCGGa--GUGGgGCCUGCUC-----UUCG--CAGG- -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 18707 | 0.7 | 0.33413 |
Target: 5'- gGCC-CGCCCCGccugacgaGACGGGAcGCG-CCu -3' miRNA: 3'- gCGGaGUGGGGC--------CUGCUCUuCGCaGG- -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 21706 | 0.7 | 0.326325 |
Target: 5'- cCGCUUCGCCUCGGACauccAGCG-CCu -3' miRNA: 3'- -GCGGAGUGGGGCCUGcucuUCGCaGG- -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 41013 | 0.7 | 0.326325 |
Target: 5'- uCGUCaUCGCCgUGGGCGucgcuGGCGUCCu -3' miRNA: 3'- -GCGG-AGUGGgGCCUGCucu--UCGCAGG- -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 29981 | 0.7 | 0.303725 |
Target: 5'- aGCagUCAuCCaCCGGAUGGGGAGCGgCCc -3' miRNA: 3'- gCGg-AGU-GG-GGCCUGCUCUUCGCaGG- -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 15433 | 0.71 | 0.296463 |
Target: 5'- uGCCgUCACCauCCGGaACGAG-AGCGgCCa -3' miRNA: 3'- gCGG-AGUGG--GGCC-UGCUCuUCGCaGG- -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 15069 | 0.71 | 0.289338 |
Target: 5'- uGCCgucCGCCCCuguGGAUGgucAGAAGCGcCCa -3' miRNA: 3'- gCGGa--GUGGGG---CCUGC---UCUUCGCaGG- -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 1614 | 0.71 | 0.275492 |
Target: 5'- uCGaCCUCACCCCGGAUGAc--GCGg-- -3' miRNA: 3'- -GC-GGAGUGGGGCCUGCUcuuCGCagg -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 4648 | 0.71 | 0.268769 |
Target: 5'- -cCCUCGcgcCCCCGGugGcAGAGGCGagCCu -3' miRNA: 3'- gcGGAGU---GGGGCCugC-UCUUCGCa-GG- -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 26659 | 0.71 | 0.26218 |
Target: 5'- gGCCgUCGCCuCCuGGGCG-GGAGCGgCCg -3' miRNA: 3'- gCGG-AGUGG-GG-CCUGCuCUUCGCaGG- -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 19116 | 0.72 | 0.255723 |
Target: 5'- aCGCCgcagugCGCCCCGcGAC----AGCGUCCg -3' miRNA: 3'- -GCGGa-----GUGGGGC-CUGcucuUCGCAGG- -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 1361 | 0.72 | 0.249396 |
Target: 5'- cCGCCUgggcucuaCAUCCCucccgacgucugGGACGAGGuguaugagAGCGUCCg -3' miRNA: 3'- -GCGGA--------GUGGGG------------CCUGCUCU--------UCGCAGG- -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 42777 | 0.72 | 0.237132 |
Target: 5'- gGCCgcaagcCGCUCCaGGGCcaucaGGGAGGCGUCCa -3' miRNA: 3'- gCGGa-----GUGGGG-CCUG-----CUCUUCGCAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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