Results 1 - 20 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11605 | 3' | -58.7 | NC_003085.1 | + | 47955 | 0.74 | 0.17382 |
Target: 5'- uGCCUCuugcccgaGCgCCGGACGGGccGCGUCg -3' miRNA: 3'- gCGGAG--------UGgGGCCUGCUCuuCGCAGg -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 47708 | 0.69 | 0.366706 |
Target: 5'- cCGUCUC-CCCauaGGGCGGGuccgugacgauGGCGUCUa -3' miRNA: 3'- -GCGGAGuGGGg--CCUGCUCu----------UCGCAGG- -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 47109 | 0.69 | 0.35836 |
Target: 5'- gGCCUCGCacugcgccuCCCGGAUGucgcaaccgauGAAGCGgcggCCg -3' miRNA: 3'- gCGGAGUG---------GGGCCUGCu----------CUUCGCa---GG- -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 46100 | 0.67 | 0.45718 |
Target: 5'- gGUCUCauuggGCUCaCGGGCGucgGGGAGCGUCg -3' miRNA: 3'- gCGGAG-----UGGG-GCCUGC---UCUUCGCAGg -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 44813 | 0.66 | 0.506674 |
Target: 5'- uCGCCUCugCCaccggGGGCGcGAGG-GUCg -3' miRNA: 3'- -GCGGAGugGGg----CCUGCuCUUCgCAGg -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 44348 | 0.69 | 0.350149 |
Target: 5'- aGCCuUCGCCCgCGGcgacGCGAGAAacGCcUCCa -3' miRNA: 3'- gCGG-AGUGGG-GCC----UGCUCUU--CGcAGG- -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 44010 | 0.72 | 0.231191 |
Target: 5'- cCGCaCUCggGCCUCGGcgguggagagACGGGAAGCgGUCCg -3' miRNA: 3'- -GCG-GAG--UGGGGCC----------UGCUCUUCG-CAGG- -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 43747 | 0.67 | 0.45718 |
Target: 5'- aGCCgggucCGCCCCGGugGuGGgcGCGggCUu -3' miRNA: 3'- gCGGa----GUGGGGCCugC-UCuuCGCa-GG- -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 43503 | 0.72 | 0.225377 |
Target: 5'- cCGCCUCcagcaGCCCggcgUGGACGGGAacGGCG-CCg -3' miRNA: 3'- -GCGGAG-----UGGG----GCCUGCUCU--UCGCaGG- -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 43397 | 0.67 | 0.444737 |
Target: 5'- cCGCUggugCAUCCCGGugGggcucgggagaaucAGGucauccuggcgcGGCGUCCg -3' miRNA: 3'- -GCGGa---GUGGGGCCugC--------------UCU------------UCGCAGG- -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 42777 | 0.72 | 0.237132 |
Target: 5'- gGCCgcaagcCGCUCCaGGGCcaucaGGGAGGCGUCCa -3' miRNA: 3'- gCGGa-----GUGGGG-CCUG-----CUCUUCGCAGG- -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 42542 | 0.66 | 0.558314 |
Target: 5'- cCGCUUCGCCUcggccagcgcgCGGGCGAGGGcugacGCGauggCCu -3' miRNA: 3'- -GCGGAGUGGG-----------GCCUGCUCUU-----CGCa---GG- -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 42479 | 0.67 | 0.466877 |
Target: 5'- gGCgUCAUCuCCGaGACGuGAGGCGaaucgCCg -3' miRNA: 3'- gCGgAGUGG-GGC-CUGCuCUUCGCa----GG- -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 42433 | 0.73 | 0.219687 |
Target: 5'- uCGCC-CACCCCGcGCGAGGgccuugagGGCG-CCg -3' miRNA: 3'- -GCGGaGUGGGGCcUGCUCU--------UCGCaGG- -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 42219 | 0.67 | 0.466877 |
Target: 5'- aGCCUguCCCCGGGCuguccguaGGGGcAGCGcugcgCCa -3' miRNA: 3'- gCGGAguGGGGCCUG--------CUCU-UCGCa----GG- -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 41991 | 0.69 | 0.372627 |
Target: 5'- aCGCCUCgccguguuccuGCCCCggcggcgucggcacGGACGAG-GGCG-CCu -3' miRNA: 3'- -GCGGAG-----------UGGGG--------------CCUGCUCuUCGCaGG- -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 41160 | 0.67 | 0.47668 |
Target: 5'- uGCCUCcaacggcuaCCUGGGCaaGGGGcuccAGCGUCCa -3' miRNA: 3'- gCGGAGug-------GGGCCUG--CUCU----UCGCAGG- -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 41013 | 0.7 | 0.326325 |
Target: 5'- uCGUCaUCGCCgUGGGCGucgcuGGCGUCCu -3' miRNA: 3'- -GCGG-AGUGGgGCCUGCucu--UCGCAGG- -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 40734 | 0.68 | 0.392533 |
Target: 5'- uCGCCg-GCgCCGGAgGcacuGGAGGUGUCCu -3' miRNA: 3'- -GCGGagUGgGGCCUgC----UCUUCGCAGG- -5' |
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11605 | 3' | -58.7 | NC_003085.1 | + | 39857 | 1.12 | 0.000275 |
Target: 5'- aCGCCUCACCCCGGACGAGAAGCGUCCg -3' miRNA: 3'- -GCGGAGUGGGGCCUGCUCUUCGCAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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