miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11605 3' -58.7 NC_003085.1 + 47955 0.74 0.17382
Target:  5'- uGCCUCuugcccgaGCgCCGGACGGGccGCGUCg -3'
miRNA:   3'- gCGGAG--------UGgGGCCUGCUCuuCGCAGg -5'
11605 3' -58.7 NC_003085.1 + 47708 0.69 0.366706
Target:  5'- cCGUCUC-CCCauaGGGCGGGuccgugacgauGGCGUCUa -3'
miRNA:   3'- -GCGGAGuGGGg--CCUGCUCu----------UCGCAGG- -5'
11605 3' -58.7 NC_003085.1 + 47109 0.69 0.35836
Target:  5'- gGCCUCGCacugcgccuCCCGGAUGucgcaaccgauGAAGCGgcggCCg -3'
miRNA:   3'- gCGGAGUG---------GGGCCUGCu----------CUUCGCa---GG- -5'
11605 3' -58.7 NC_003085.1 + 46100 0.67 0.45718
Target:  5'- gGUCUCauuggGCUCaCGGGCGucgGGGAGCGUCg -3'
miRNA:   3'- gCGGAG-----UGGG-GCCUGC---UCUUCGCAGg -5'
11605 3' -58.7 NC_003085.1 + 44813 0.66 0.506674
Target:  5'- uCGCCUCugCCaccggGGGCGcGAGG-GUCg -3'
miRNA:   3'- -GCGGAGugGGg----CCUGCuCUUCgCAGg -5'
11605 3' -58.7 NC_003085.1 + 44348 0.69 0.350149
Target:  5'- aGCCuUCGCCCgCGGcgacGCGAGAAacGCcUCCa -3'
miRNA:   3'- gCGG-AGUGGG-GCC----UGCUCUU--CGcAGG- -5'
11605 3' -58.7 NC_003085.1 + 44010 0.72 0.231191
Target:  5'- cCGCaCUCggGCCUCGGcgguggagagACGGGAAGCgGUCCg -3'
miRNA:   3'- -GCG-GAG--UGGGGCC----------UGCUCUUCG-CAGG- -5'
11605 3' -58.7 NC_003085.1 + 43747 0.67 0.45718
Target:  5'- aGCCgggucCGCCCCGGugGuGGgcGCGggCUu -3'
miRNA:   3'- gCGGa----GUGGGGCCugC-UCuuCGCa-GG- -5'
11605 3' -58.7 NC_003085.1 + 43503 0.72 0.225377
Target:  5'- cCGCCUCcagcaGCCCggcgUGGACGGGAacGGCG-CCg -3'
miRNA:   3'- -GCGGAG-----UGGG----GCCUGCUCU--UCGCaGG- -5'
11605 3' -58.7 NC_003085.1 + 43397 0.67 0.444737
Target:  5'- cCGCUggugCAUCCCGGugGggcucgggagaaucAGGucauccuggcgcGGCGUCCg -3'
miRNA:   3'- -GCGGa---GUGGGGCCugC--------------UCU------------UCGCAGG- -5'
11605 3' -58.7 NC_003085.1 + 42777 0.72 0.237132
Target:  5'- gGCCgcaagcCGCUCCaGGGCcaucaGGGAGGCGUCCa -3'
miRNA:   3'- gCGGa-----GUGGGG-CCUG-----CUCUUCGCAGG- -5'
11605 3' -58.7 NC_003085.1 + 42542 0.66 0.558314
Target:  5'- cCGCUUCGCCUcggccagcgcgCGGGCGAGGGcugacGCGauggCCu -3'
miRNA:   3'- -GCGGAGUGGG-----------GCCUGCUCUU-----CGCa---GG- -5'
11605 3' -58.7 NC_003085.1 + 42479 0.67 0.466877
Target:  5'- gGCgUCAUCuCCGaGACGuGAGGCGaaucgCCg -3'
miRNA:   3'- gCGgAGUGG-GGC-CUGCuCUUCGCa----GG- -5'
11605 3' -58.7 NC_003085.1 + 42433 0.73 0.219687
Target:  5'- uCGCC-CACCCCGcGCGAGGgccuugagGGCG-CCg -3'
miRNA:   3'- -GCGGaGUGGGGCcUGCUCU--------UCGCaGG- -5'
11605 3' -58.7 NC_003085.1 + 42219 0.67 0.466877
Target:  5'- aGCCUguCCCCGGGCuguccguaGGGGcAGCGcugcgCCa -3'
miRNA:   3'- gCGGAguGGGGCCUG--------CUCU-UCGCa----GG- -5'
11605 3' -58.7 NC_003085.1 + 41991 0.69 0.372627
Target:  5'- aCGCCUCgccguguuccuGCCCCggcggcgucggcacGGACGAG-GGCG-CCu -3'
miRNA:   3'- -GCGGAG-----------UGGGG--------------CCUGCUCuUCGCaGG- -5'
11605 3' -58.7 NC_003085.1 + 41160 0.67 0.47668
Target:  5'- uGCCUCcaacggcuaCCUGGGCaaGGGGcuccAGCGUCCa -3'
miRNA:   3'- gCGGAGug-------GGGCCUG--CUCU----UCGCAGG- -5'
11605 3' -58.7 NC_003085.1 + 41013 0.7 0.326325
Target:  5'- uCGUCaUCGCCgUGGGCGucgcuGGCGUCCu -3'
miRNA:   3'- -GCGG-AGUGGgGCCUGCucu--UCGCAGG- -5'
11605 3' -58.7 NC_003085.1 + 40734 0.68 0.392533
Target:  5'- uCGCCg-GCgCCGGAgGcacuGGAGGUGUCCu -3'
miRNA:   3'- -GCGGagUGgGGCCUgC----UCUUCGCAGG- -5'
11605 3' -58.7 NC_003085.1 + 39857 1.12 0.000275
Target:  5'- aCGCCUCACCCCGGACGAGAAGCGUCCg -3'
miRNA:   3'- -GCGGAGUGGGGCCUGCUCUUCGCAGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.