Results 41 - 60 of 84 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11605 | 5' | -56 | NC_003085.1 | + | 15153 | 0.68 | 0.505513 |
Target: 5'- cGAGACgcacuacuGCCCCcucUGCGcuGAcGGCCCGGCu -3' miRNA: 3'- cCUCUG--------UGGGGu--ACGU--CU-UCGGGUCG- -5' |
|||||||
11605 | 5' | -56 | NC_003085.1 | + | 24795 | 0.68 | 0.495076 |
Target: 5'- uGGAGAggaACUUCAggcUGCGGAAGCCgAGg -3' miRNA: 3'- -CCUCUg--UGGGGU---ACGUCUUCGGgUCg -5' |
|||||||
11605 | 5' | -56 | NC_003085.1 | + | 20737 | 0.68 | 0.495076 |
Target: 5'- uGGAGuACGCCCUc--CAGGAccggcugcuGCCCGGCu -3' miRNA: 3'- -CCUC-UGUGGGGuacGUCUU---------CGGGUCG- -5' |
|||||||
11605 | 5' | -56 | NC_003085.1 | + | 34962 | 0.68 | 0.495076 |
Target: 5'- cGGAGGCGCCUCAca-GGAAGCCg--- -3' miRNA: 3'- -CCUCUGUGGGGUacgUCUUCGGgucg -5' |
|||||||
11605 | 5' | -56 | NC_003085.1 | + | 20407 | 0.68 | 0.484737 |
Target: 5'- cGGAcACGCCCCAggGCuG-GGCCCAacGCu -3' miRNA: 3'- -CCUcUGUGGGGUa-CGuCuUCGGGU--CG- -5' |
|||||||
11605 | 5' | -56 | NC_003085.1 | + | 1031 | 0.69 | 0.474502 |
Target: 5'- cGGccuCGCCguCCAUGCGGAGGaagCCAGCg -3' miRNA: 3'- -CCucuGUGG--GGUACGUCUUCg--GGUCG- -5' |
|||||||
11605 | 5' | -56 | NC_003085.1 | + | 899 | 0.69 | 0.471453 |
Target: 5'- aGGGGCAUCCCGUGCcaacccgcucgGGAgaggaggacuggaaGGCCCGcGCc -3' miRNA: 3'- cCUCUGUGGGGUACG-----------UCU--------------UCGGGU-CG- -5' |
|||||||
11605 | 5' | -56 | NC_003085.1 | + | 38986 | 0.69 | 0.464377 |
Target: 5'- uGAGACgGCCCC--GCAGAuucgAGCCC-GCu -3' miRNA: 3'- cCUCUG-UGGGGuaCGUCU----UCGGGuCG- -5' |
|||||||
11605 | 5' | -56 | NC_003085.1 | + | 7082 | 0.69 | 0.464377 |
Target: 5'- -cAGugGCCCCAUGguGAGcGCCauccucgcCGGCc -3' miRNA: 3'- ccUCugUGGGGUACguCUU-CGG--------GUCG- -5' |
|||||||
11605 | 5' | -56 | NC_003085.1 | + | 44494 | 0.69 | 0.454366 |
Target: 5'- uGAG-CACCUCGUccgucuucugcGCGGugguGCCCAGCa -3' miRNA: 3'- cCUCuGUGGGGUA-----------CGUCuu--CGGGUCG- -5' |
|||||||
11605 | 5' | -56 | NC_003085.1 | + | 16533 | 0.69 | 0.454366 |
Target: 5'- --cGACACCCUuUGCccGAAGUgCAGCg -3' miRNA: 3'- ccuCUGUGGGGuACGu-CUUCGgGUCG- -5' |
|||||||
11605 | 5' | -56 | NC_003085.1 | + | 42669 | 0.69 | 0.454366 |
Target: 5'- ---uGCACCgCCGUGCG--GGCCCGGUa -3' miRNA: 3'- ccucUGUGG-GGUACGUcuUCGGGUCG- -5' |
|||||||
11605 | 5' | -56 | NC_003085.1 | + | 34414 | 0.69 | 0.454366 |
Target: 5'- cGAGGCuuugGCCCUGggcUGCGGcuugggccGGCCCAGCg -3' miRNA: 3'- cCUCUG----UGGGGU---ACGUCu-------UCGGGUCG- -5' |
|||||||
11605 | 5' | -56 | NC_003085.1 | + | 22911 | 0.7 | 0.425055 |
Target: 5'- cGGAGGCugCCgGgGC-GAAGCCCuccgaGGCc -3' miRNA: 3'- -CCUCUGugGGgUaCGuCUUCGGG-----UCG- -5' |
|||||||
11605 | 5' | -56 | NC_003085.1 | + | 27451 | 0.7 | 0.414594 |
Target: 5'- aGAGACGCUCCAUuugagcaucuggaGCAGGAagggagcgcuGCCgGGCa -3' miRNA: 3'- cCUCUGUGGGGUA-------------CGUCUU----------CGGgUCG- -5' |
|||||||
11605 | 5' | -56 | NC_003085.1 | + | 41836 | 0.7 | 0.406153 |
Target: 5'- ---aGCGCCCCAUG-AGucccGCCCGGCg -3' miRNA: 3'- ccucUGUGGGGUACgUCuu--CGGGUCG- -5' |
|||||||
11605 | 5' | -56 | NC_003085.1 | + | 47210 | 0.7 | 0.396902 |
Target: 5'- cGAGGCcCCCCGguggGCAGGcauugcGCaCCAGCg -3' miRNA: 3'- cCUCUGuGGGGUa---CGUCUu-----CG-GGUCG- -5' |
|||||||
11605 | 5' | -56 | NC_003085.1 | + | 39373 | 0.7 | 0.387788 |
Target: 5'- cGGuuccGACGCCggcgggggcUCAUGCGGAAGCaacCCAGCc -3' miRNA: 3'- -CCu---CUGUGG---------GGUACGUCUUCG---GGUCG- -5' |
|||||||
11605 | 5' | -56 | NC_003085.1 | + | 38624 | 0.71 | 0.369978 |
Target: 5'- cGGAGcucGCAUCCCAcucccGCAGucgcuGCCCGGUg -3' miRNA: 3'- -CCUC---UGUGGGGUa----CGUCuu---CGGGUCG- -5' |
|||||||
11605 | 5' | -56 | NC_003085.1 | + | 42454 | 0.71 | 0.369978 |
Target: 5'- gGGAG-CGgUCCGUGUcGAGGCCCguGGCg -3' miRNA: 3'- -CCUCuGUgGGGUACGuCUUCGGG--UCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home