miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11605 5' -56 NC_003085.1 + 5362 0.67 0.591821
Target:  5'- aGAGGCAUUCCGU-CGGcuGGCCgCGGCg -3'
miRNA:   3'- cCUCUGUGGGGUAcGUCu-UCGG-GUCG- -5'
11605 5' -56 NC_003085.1 + 20580 0.67 0.58522
Target:  5'- uGAGACGCCUgcgacugcugcucggCAgcgccGCGGAAGUCgGGCg -3'
miRNA:   3'- cCUCUGUGGG---------------GUa----CGUCUUCGGgUCG- -5'
11605 5' -56 NC_003085.1 + 38079 0.67 0.580827
Target:  5'- cGGAGACGgCagc-GCAGguGUCCGGCg -3'
miRNA:   3'- -CCUCUGUgGgguaCGUCuuCGGGUCG- -5'
11605 5' -56 NC_003085.1 + 30308 0.67 0.580827
Target:  5'- -aGGACgACCCCAUGgccaccCAGcGGGCCCuGGCg -3'
miRNA:   3'- ccUCUG-UGGGGUAC------GUC-UUCGGG-UCG- -5'
11605 5' -56 NC_003085.1 + 48102 0.67 0.580827
Target:  5'- gGGAGGgAUguagagCCCAgGCGGAAGCCguccguacucCAGCg -3'
miRNA:   3'- -CCUCUgUG------GGGUaCGUCUUCGG----------GUCG- -5'
11605 5' -56 NC_003085.1 + 29187 0.67 0.580827
Target:  5'- uGGGcuuCGCCUCAUccGcCGGAGGCaCCAGCg -3'
miRNA:   3'- cCUCu--GUGGGGUA--C-GUCUUCG-GGUCG- -5'
11605 5' -56 NC_003085.1 + 9208 0.67 0.580827
Target:  5'- gGGGGGCgggacguagGCCCCG-GCGGcgaaGAGCCC-GCc -3'
miRNA:   3'- -CCUCUG---------UGGGGUaCGUC----UUCGGGuCG- -5'
11605 5' -56 NC_003085.1 + 17471 0.67 0.57973
Target:  5'- gGGAGGCagcgccaGCCCCAgGCguaacGGggGCagucgCCAGCc -3'
miRNA:   3'- -CCUCUG-------UGGGGUaCG-----UCuuCG-----GGUCG- -5'
11605 5' -56 NC_003085.1 + 11839 0.67 0.569876
Target:  5'- cGGAgGACACCCUGUGU-GAGGCgCAc- -3'
miRNA:   3'- -CCU-CUGUGGGGUACGuCUUCGgGUcg -5'
11605 5' -56 NC_003085.1 + 41270 0.67 0.569876
Target:  5'- uGGAcuGGCGggCCAUGCAcAGcGCCCAGCg -3'
miRNA:   3'- -CCU--CUGUggGGUACGUcUU-CGGGUCG- -5'
11605 5' -56 NC_003085.1 + 41095 0.67 0.558976
Target:  5'- -cGGACugCCUAccuggacuggGUGGAGGCCCAGg -3'
miRNA:   3'- ccUCUGugGGGUa---------CGUCUUCGGGUCg -5'
11605 5' -56 NC_003085.1 + 19329 0.67 0.558976
Target:  5'- cGGGGG---CCUAUGUcaacGAGGCCCGGCa -3'
miRNA:   3'- -CCUCUgugGGGUACGu---CUUCGGGUCG- -5'
11605 5' -56 NC_003085.1 + 17190 0.67 0.558976
Target:  5'- gGGAGACGagUCCCggGCcaccGAGGCCUGGg -3'
miRNA:   3'- -CCUCUGU--GGGGuaCGu---CUUCGGGUCg -5'
11605 5' -56 NC_003085.1 + 22453 0.67 0.547055
Target:  5'- -cAGGCACaccaaggCCCGUGCAccacucgcGGuAGCCCAGCc -3'
miRNA:   3'- ccUCUGUG-------GGGUACGU--------CU-UCGGGUCG- -5'
11605 5' -56 NC_003085.1 + 21755 0.68 0.537362
Target:  5'- cGAGGCGCgaCAgcggGCGGAcGCCCAGa -3'
miRNA:   3'- cCUCUGUGggGUa---CGUCUuCGGGUCg -5'
11605 5' -56 NC_003085.1 + 16300 0.68 0.526663
Target:  5'- uGGAGcAgGCgCCAUGaCGGGauGGCCCGGg -3'
miRNA:   3'- -CCUC-UgUGgGGUAC-GUCU--UCGGGUCg -5'
11605 5' -56 NC_003085.1 + 15153 0.68 0.505513
Target:  5'- cGAGACgcacuacuGCCCCcucUGCGcuGAcGGCCCGGCu -3'
miRNA:   3'- cCUCUG--------UGGGGu--ACGU--CU-UCGGGUCG- -5'
11605 5' -56 NC_003085.1 + 2265 0.68 0.505513
Target:  5'- cGGGGgGCCUCGUcGCGGAcuucuucgcgGGCuCCGGCa -3'
miRNA:   3'- cCUCUgUGGGGUA-CGUCU----------UCG-GGUCG- -5'
11605 5' -56 NC_003085.1 + 33219 0.68 0.505513
Target:  5'- cGAGGCACUcggccgggcuCCAUGagccguuGAGCCCGGCa -3'
miRNA:   3'- cCUCUGUGG----------GGUACguc----UUCGGGUCG- -5'
11605 5' -56 NC_003085.1 + 29414 0.68 0.505513
Target:  5'- -cGGcCAgCCCAUgGCGGAGGCUCAGg -3'
miRNA:   3'- ccUCuGUgGGGUA-CGUCUUCGGGUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.