miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11605 5' -56 NC_003085.1 + 16300 0.68 0.526663
Target:  5'- uGGAGcAgGCgCCAUGaCGGGauGGCCCGGg -3'
miRNA:   3'- -CCUC-UgUGgGGUAC-GUCU--UCGGGUCg -5'
11605 5' -56 NC_003085.1 + 16533 0.69 0.454366
Target:  5'- --cGACACCCUuUGCccGAAGUgCAGCg -3'
miRNA:   3'- ccuCUGUGGGGuACGu-CUUCGgGUCG- -5'
11605 5' -56 NC_003085.1 + 16792 0.66 0.647123
Target:  5'- -cAGugGCCauuguuguGUGCGGAGGCCC-GCa -3'
miRNA:   3'- ccUCugUGGgg------UACGUCUUCGGGuCG- -5'
11605 5' -56 NC_003085.1 + 16941 0.66 0.624974
Target:  5'- cGGugcGGUACUCC-UGCGGAAGCgCCGGUu -3'
miRNA:   3'- -CCu--CUGUGGGGuACGUCUUCG-GGUCG- -5'
11605 5' -56 NC_003085.1 + 17190 0.67 0.558976
Target:  5'- gGGAGACGagUCCCggGCcaccGAGGCCUGGg -3'
miRNA:   3'- -CCUCUGU--GGGGuaCGu---CUUCGGGUCg -5'
11605 5' -56 NC_003085.1 + 17471 0.67 0.57973
Target:  5'- gGGAGGCagcgccaGCCCCAgGCguaacGGggGCagucgCCAGCc -3'
miRNA:   3'- -CCUCUG-------UGGGGUaCG-----UCuuCG-----GGUCG- -5'
11605 5' -56 NC_003085.1 + 19329 0.67 0.558976
Target:  5'- cGGGGG---CCUAUGUcaacGAGGCCCGGCa -3'
miRNA:   3'- -CCUCUgugGGGUACGu---CUUCGGGUCG- -5'
11605 5' -56 NC_003085.1 + 20407 0.68 0.484737
Target:  5'- cGGAcACGCCCCAggGCuG-GGCCCAacGCu -3'
miRNA:   3'- -CCUcUGUGGGGUa-CGuCuUCGGGU--CG- -5'
11605 5' -56 NC_003085.1 + 20580 0.67 0.58522
Target:  5'- uGAGACGCCUgcgacugcugcucggCAgcgccGCGGAAGUCgGGCg -3'
miRNA:   3'- cCUCUGUGGG---------------GUa----CGUCUUCGGgUCG- -5'
11605 5' -56 NC_003085.1 + 20737 0.68 0.495076
Target:  5'- uGGAGuACGCCCUc--CAGGAccggcugcuGCCCGGCu -3'
miRNA:   3'- -CCUC-UGUGGGGuacGUCUU---------CGGGUCG- -5'
11605 5' -56 NC_003085.1 + 21354 0.66 0.63605
Target:  5'- uGGAGcGCGCCauccgCGUGguGGgcgucuacgacaAGUCCAGCg -3'
miRNA:   3'- -CCUC-UGUGGg----GUACguCU------------UCGGGUCG- -5'
11605 5' -56 NC_003085.1 + 21755 0.68 0.537362
Target:  5'- cGAGGCGCgaCAgcggGCGGAcGCCCAGa -3'
miRNA:   3'- cCUCUGUGggGUa---CGUCUuCGGGUCg -5'
11605 5' -56 NC_003085.1 + 21960 0.79 0.099977
Target:  5'- gGGGGugGCUCCGUuggcucaGCAGguGCCCGGCa -3'
miRNA:   3'- -CCUCugUGGGGUA-------CGUCuuCGGGUCG- -5'
11605 5' -56 NC_003085.1 + 22095 0.75 0.200912
Target:  5'- aGAGGCGCagaagcaggccgCCCA-GCAG-AGCCCGGCg -3'
miRNA:   3'- cCUCUGUG------------GGGUaCGUCuUCGGGUCG- -5'
11605 5' -56 NC_003085.1 + 22453 0.67 0.547055
Target:  5'- -cAGGCACaccaaggCCCGUGCAccacucgcGGuAGCCCAGCc -3'
miRNA:   3'- ccUCUGUG-------GGGUACGU--------CU-UCGGGUCG- -5'
11605 5' -56 NC_003085.1 + 22815 0.66 0.629404
Target:  5'- aGGAGGCgacgGCCCCGacuccgauUGCcacgucggcagcgaaGGAgAGUCCGGCa -3'
miRNA:   3'- -CCUCUG----UGGGGU--------ACG---------------UCU-UCGGGUCG- -5'
11605 5' -56 NC_003085.1 + 22911 0.7 0.425055
Target:  5'- cGGAGGCugCCgGgGC-GAAGCCCuccgaGGCc -3'
miRNA:   3'- -CCUCUGugGGgUaCGuCUUCGGG-----UCG- -5'
11605 5' -56 NC_003085.1 + 23453 0.72 0.304484
Target:  5'- aGGGACGC---AUGaCGGAGGCCCAGCg -3'
miRNA:   3'- cCUCUGUGgggUAC-GUCUUCGGGUCG- -5'
11605 5' -56 NC_003085.1 + 24593 0.66 0.613903
Target:  5'- -uGGGCGCCgC-UGCAGGugagguugccGGCCCAGg -3'
miRNA:   3'- ccUCUGUGGgGuACGUCU----------UCGGGUCg -5'
11605 5' -56 NC_003085.1 + 24795 0.68 0.495076
Target:  5'- uGGAGAggaACUUCAggcUGCGGAAGCCgAGg -3'
miRNA:   3'- -CCUCUg--UGGGGU---ACGUCUUCGGgUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.