miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11605 5' -56 NC_003085.1 + 558 0.66 0.613903
Target:  5'- cGGGGugGCCgUcgaaGUGCAGGgcgAGCCCccGCc -3'
miRNA:   3'- -CCUCugUGGgG----UACGUCU---UCGGGu-CG- -5'
11605 5' -56 NC_003085.1 + 899 0.69 0.471453
Target:  5'- aGGGGCAUCCCGUGCcaacccgcucgGGAgaggaggacuggaaGGCCCGcGCc -3'
miRNA:   3'- cCUCUGUGGGGUACG-----------UCU--------------UCGGGU-CG- -5'
11605 5' -56 NC_003085.1 + 1031 0.69 0.474502
Target:  5'- cGGccuCGCCguCCAUGCGGAGGaagCCAGCg -3'
miRNA:   3'- -CCucuGUGG--GGUACGUCUUCg--GGUCG- -5'
11605 5' -56 NC_003085.1 + 2265 0.68 0.505513
Target:  5'- cGGGGgGCCUCGUcGCGGAcuucuucgcgGGCuCCGGCa -3'
miRNA:   3'- cCUCUgUGGGGUA-CGUCU----------UCG-GGUCG- -5'
11605 5' -56 NC_003085.1 + 2358 0.71 0.327954
Target:  5'- gGGAGGCGCa--GUGC-GAGGCCgCGGCg -3'
miRNA:   3'- -CCUCUGUGgggUACGuCUUCGG-GUCG- -5'
11605 5' -56 NC_003085.1 + 2788 0.66 0.647123
Target:  5'- cGGcGGCGCUCCAggcgGCGGcgaagcGCCuCGGCa -3'
miRNA:   3'- -CCuCUGUGGGGUa---CGUCuu----CGG-GUCG- -5'
11605 5' -56 NC_003085.1 + 5362 0.67 0.591821
Target:  5'- aGAGGCAUUCCGU-CGGcuGGCCgCGGCg -3'
miRNA:   3'- cCUCUGUGGGGUAcGUCu-UCGG-GUCG- -5'
11605 5' -56 NC_003085.1 + 6161 0.66 0.63605
Target:  5'- cGGGACugguggaCCUGUGCuccauGCCCAGCa -3'
miRNA:   3'- cCUCUGug-----GGGUACGucuu-CGGGUCG- -5'
11605 5' -56 NC_003085.1 + 7082 0.69 0.464377
Target:  5'- -cAGugGCCCCAUGguGAGcGCCauccucgcCGGCc -3'
miRNA:   3'- ccUCugUGGGGUACguCUU-CGG--------GUCG- -5'
11605 5' -56 NC_003085.1 + 9208 0.67 0.580827
Target:  5'- gGGGGGCgggacguagGCCCCG-GCGGcgaaGAGCCC-GCc -3'
miRNA:   3'- -CCUCUG---------UGGGGUaCGUC----UUCGGGuCG- -5'
11605 5' -56 NC_003085.1 + 10201 0.72 0.319985
Target:  5'- aGGAGGCGCgCagcaCAUGCuGcGGCCCAGa -3'
miRNA:   3'- -CCUCUGUG-Gg---GUACGuCuUCGGGUCg -5'
11605 5' -56 NC_003085.1 + 10377 0.71 0.356138
Target:  5'- gGGAGcGUugCCUAUGCGGAGGCuguucacaccgccuuCCAGCa -3'
miRNA:   3'- -CCUC-UGugGGGUACGUCUUCG---------------GGUCG- -5'
11605 5' -56 NC_003085.1 + 10706 0.66 0.658182
Target:  5'- cGGAgGGCACUCCGUGUccguGguGCCUacAGCc -3'
miRNA:   3'- -CCU-CUGUGGGGUACGu---CuuCGGG--UCG- -5'
11605 5' -56 NC_003085.1 + 11265 0.83 0.057881
Target:  5'- cGGuGACACCUCGaagGCAGAgugGGCCCGGCu -3'
miRNA:   3'- -CCuCUGUGGGGUa--CGUCU---UCGGGUCG- -5'
11605 5' -56 NC_003085.1 + 11839 0.67 0.569876
Target:  5'- cGGAgGACACCCUGUGU-GAGGCgCAc- -3'
miRNA:   3'- -CCU-CUGUGGGGUACGuCUUCGgGUcg -5'
11605 5' -56 NC_003085.1 + 11905 0.66 0.613903
Target:  5'- uGGccAGGCGCUCCAcguuUGCcGAAGCCgGGa -3'
miRNA:   3'- -CC--UCUGUGGGGU----ACGuCUUCGGgUCg -5'
11605 5' -56 NC_003085.1 + 12946 0.66 0.624974
Target:  5'- aGGAccguccGCGCCgCGUcCGGAAgGCCCGGCa -3'
miRNA:   3'- -CCUc-----UGUGGgGUAcGUCUU-CGGGUCG- -5'
11605 5' -56 NC_003085.1 + 13818 0.75 0.206372
Target:  5'- aGGuGGCGCCaugaCGUGCAGAcgccGCCCAGg -3'
miRNA:   3'- -CCuCUGUGGg---GUACGUCUu---CGGGUCg -5'
11605 5' -56 NC_003085.1 + 14985 0.78 0.115576
Target:  5'- gGGAGGCGCCCCAggGCAGcguCCCAGa -3'
miRNA:   3'- -CCUCUGUGGGGUa-CGUCuucGGGUCg -5'
11605 5' -56 NC_003085.1 + 15153 0.68 0.505513
Target:  5'- cGAGACgcacuacuGCCCCcucUGCGcuGAcGGCCCGGCu -3'
miRNA:   3'- cCUCUG--------UGGGGu--ACGU--CU-UCGGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.