Results 1 - 20 of 84 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11605 | 5' | -56 | NC_003085.1 | + | 39899 | 1.02 | 0.002375 |
Target: 5'- aGGAGACACCCCAUGCAGAAG-CCAGCg -3' miRNA: 3'- -CCUCUGUGGGGUACGUCUUCgGGUCG- -5' |
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11605 | 5' | -56 | NC_003085.1 | + | 11265 | 0.83 | 0.057881 |
Target: 5'- cGGuGACACCUCGaagGCAGAgugGGCCCGGCu -3' miRNA: 3'- -CCuCUGUGGGGUa--CGUCU---UCGGGUCG- -5' |
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11605 | 5' | -56 | NC_003085.1 | + | 21960 | 0.79 | 0.099977 |
Target: 5'- gGGGGugGCUCCGUuggcucaGCAGguGCCCGGCa -3' miRNA: 3'- -CCUCugUGGGGUA-------CGUCuuCGGGUCG- -5' |
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11605 | 5' | -56 | NC_003085.1 | + | 25543 | 0.79 | 0.106144 |
Target: 5'- cGGAGGCugCCCAUagcggGCAGAAGCa-GGCg -3' miRNA: 3'- -CCUCUGugGGGUA-----CGUCUUCGggUCG- -5' |
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11605 | 5' | -56 | NC_003085.1 | + | 14985 | 0.78 | 0.115576 |
Target: 5'- gGGAGGCGCCCCAggGCAGcguCCCAGa -3' miRNA: 3'- -CCUCUGUGGGGUa-CGUCuucGGGUCg -5' |
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11605 | 5' | -56 | NC_003085.1 | + | 45637 | 0.76 | 0.157216 |
Target: 5'- aGAGGCGCaCCUGUuugGCuguGAGGCCCAGCa -3' miRNA: 3'- cCUCUGUG-GGGUA---CGu--CUUCGGGUCG- -5' |
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11605 | 5' | -56 | NC_003085.1 | + | 48881 | 0.76 | 0.180315 |
Target: 5'- cGAGACACCCUgcgGCGGggGCCgCccuGCa -3' miRNA: 3'- cCUCUGUGGGGua-CGUCuuCGG-Gu--CG- -5' |
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11605 | 5' | -56 | NC_003085.1 | + | 31517 | 0.76 | 0.180315 |
Target: 5'- -aGGugGCCCCA-GCAG-AGCCCAGa -3' miRNA: 3'- ccUCugUGGGGUaCGUCuUCGGGUCg -5' |
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11605 | 5' | -56 | NC_003085.1 | + | 31612 | 0.75 | 0.192438 |
Target: 5'- aGGAGGCACCggCCgcggggccugaagucGUGCcuGAGCCCAGCc -3' miRNA: 3'- -CCUCUGUGG--GG---------------UACGucUUCGGGUCG- -5' |
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11605 | 5' | -56 | NC_003085.1 | + | 27514 | 0.75 | 0.200912 |
Target: 5'- cGGAGcCACCCCcUGCAuGAAGCUggcgaugccggaCAGCa -3' miRNA: 3'- -CCUCuGUGGGGuACGU-CUUCGG------------GUCG- -5' |
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11605 | 5' | -56 | NC_003085.1 | + | 22095 | 0.75 | 0.200912 |
Target: 5'- aGAGGCGCagaagcaggccgCCCA-GCAG-AGCCCGGCg -3' miRNA: 3'- cCUCUGUG------------GGGUaCGUCuUCGGGUCG- -5' |
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11605 | 5' | -56 | NC_003085.1 | + | 41758 | 0.75 | 0.206372 |
Target: 5'- -cGGACGCCCgGccaGCcuGGAAGCCCAGCc -3' miRNA: 3'- ccUCUGUGGGgUa--CG--UCUUCGGGUCG- -5' |
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11605 | 5' | -56 | NC_003085.1 | + | 13818 | 0.75 | 0.206372 |
Target: 5'- aGGuGGCGCCaugaCGUGCAGAcgccGCCCAGg -3' miRNA: 3'- -CCuCUGUGGg---GUACGUCUu---CGGGUCg -5' |
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11605 | 5' | -56 | NC_003085.1 | + | 49099 | 0.74 | 0.223526 |
Target: 5'- aGGAGGgGCCCCucGUGCugacGggGCcCCGGUg -3' miRNA: 3'- -CCUCUgUGGGG--UACGu---CuuCG-GGUCG- -5' |
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11605 | 5' | -56 | NC_003085.1 | + | 32680 | 0.74 | 0.229508 |
Target: 5'- aGAGACGCCCCucaacaagGUGCGGAaaGGCauugCGGCa -3' miRNA: 3'- cCUCUGUGGGG--------UACGUCU--UCGg---GUCG- -5' |
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11605 | 5' | -56 | NC_003085.1 | + | 35808 | 0.74 | 0.229508 |
Target: 5'- uGGGGuuGCGCuCCCGgaggagccGCAGAAGCuCCGGCg -3' miRNA: 3'- -CCUC--UGUG-GGGUa-------CGUCUUCG-GGUCG- -5' |
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11605 | 5' | -56 | NC_003085.1 | + | 26562 | 0.73 | 0.261465 |
Target: 5'- cGGAGACGCCgaacgCCGacGCAccGGAGUCCGGCg -3' miRNA: 3'- -CCUCUGUGG-----GGUa-CGU--CUUCGGGUCG- -5' |
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11605 | 5' | -56 | NC_003085.1 | + | 23453 | 0.72 | 0.304484 |
Target: 5'- aGGGACGC---AUGaCGGAGGCCCAGCg -3' miRNA: 3'- cCUCUGUGgggUAC-GUCUUCGGGUCG- -5' |
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11605 | 5' | -56 | NC_003085.1 | + | 32846 | 0.72 | 0.309843 |
Target: 5'- cGAGAgGCCgCGcGCcgcgggaccgcccgGGAGGCCCAGCg -3' miRNA: 3'- cCUCUgUGGgGUaCG--------------UCUUCGGGUCG- -5' |
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11605 | 5' | -56 | NC_003085.1 | + | 10201 | 0.72 | 0.319985 |
Target: 5'- aGGAGGCGCgCagcaCAUGCuGcGGCCCAGa -3' miRNA: 3'- -CCUCUGUG-Gg---GUACGuCuUCGGGUCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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