miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11605 5' -56 NC_003085.1 + 2358 0.71 0.327954
Target:  5'- gGGAGGCGCa--GUGC-GAGGCCgCGGCg -3'
miRNA:   3'- -CCUCUGUGgggUACGuCUUCGG-GUCG- -5'
11605 5' -56 NC_003085.1 + 28607 0.71 0.344329
Target:  5'- uGGGcGGCACCgCA-GCGGcGAGCUCGGCg -3'
miRNA:   3'- -CCU-CUGUGGgGUaCGUC-UUCGGGUCG- -5'
11605 5' -56 NC_003085.1 + 35422 0.71 0.352735
Target:  5'- -cGGACACgCCGUcgcGCAGuAGCUCGGCa -3'
miRNA:   3'- ccUCUGUGgGGUA---CGUCuUCGGGUCG- -5'
11605 5' -56 NC_003085.1 + 10377 0.71 0.356138
Target:  5'- gGGAGcGUugCCUAUGCGGAGGCuguucacaccgccuuCCAGCa -3'
miRNA:   3'- -CCUC-UGugGGGUACGUCUUCG---------------GGUCG- -5'
11605 5' -56 NC_003085.1 + 42454 0.71 0.369978
Target:  5'- gGGAG-CGgUCCGUGUcGAGGCCCguGGCg -3'
miRNA:   3'- -CCUCuGUgGGGUACGuCUUCGGG--UCG- -5'
11605 5' -56 NC_003085.1 + 38624 0.71 0.369978
Target:  5'- cGGAGcucGCAUCCCAcucccGCAGucgcuGCCCGGUg -3'
miRNA:   3'- -CCUC---UGUGGGGUa----CGUCuu---CGGGUCG- -5'
11605 5' -56 NC_003085.1 + 39373 0.7 0.387788
Target:  5'- cGGuuccGACGCCggcgggggcUCAUGCGGAAGCaacCCAGCc -3'
miRNA:   3'- -CCu---CUGUGG---------GGUACGUCUUCG---GGUCG- -5'
11605 5' -56 NC_003085.1 + 47210 0.7 0.396902
Target:  5'- cGAGGCcCCCCGguggGCAGGcauugcGCaCCAGCg -3'
miRNA:   3'- cCUCUGuGGGGUa---CGUCUu-----CG-GGUCG- -5'
11605 5' -56 NC_003085.1 + 41836 0.7 0.406153
Target:  5'- ---aGCGCCCCAUG-AGucccGCCCGGCg -3'
miRNA:   3'- ccucUGUGGGGUACgUCuu--CGGGUCG- -5'
11605 5' -56 NC_003085.1 + 27451 0.7 0.414594
Target:  5'- aGAGACGCUCCAUuugagcaucuggaGCAGGAagggagcgcuGCCgGGCa -3'
miRNA:   3'- cCUCUGUGGGGUA-------------CGUCUU----------CGGgUCG- -5'
11605 5' -56 NC_003085.1 + 22911 0.7 0.425055
Target:  5'- cGGAGGCugCCgGgGC-GAAGCCCuccgaGGCc -3'
miRNA:   3'- -CCUCUGugGGgUaCGuCUUCGGG-----UCG- -5'
11605 5' -56 NC_003085.1 + 34414 0.69 0.454366
Target:  5'- cGAGGCuuugGCCCUGggcUGCGGcuugggccGGCCCAGCg -3'
miRNA:   3'- cCUCUG----UGGGGU---ACGUCu-------UCGGGUCG- -5'
11605 5' -56 NC_003085.1 + 44494 0.69 0.454366
Target:  5'- uGAG-CACCUCGUccgucuucugcGCGGugguGCCCAGCa -3'
miRNA:   3'- cCUCuGUGGGGUA-----------CGUCuu--CGGGUCG- -5'
11605 5' -56 NC_003085.1 + 16533 0.69 0.454366
Target:  5'- --cGACACCCUuUGCccGAAGUgCAGCg -3'
miRNA:   3'- ccuCUGUGGGGuACGu-CUUCGgGUCG- -5'
11605 5' -56 NC_003085.1 + 42669 0.69 0.454366
Target:  5'- ---uGCACCgCCGUGCG--GGCCCGGUa -3'
miRNA:   3'- ccucUGUGG-GGUACGUcuUCGGGUCG- -5'
11605 5' -56 NC_003085.1 + 38986 0.69 0.464377
Target:  5'- uGAGACgGCCCC--GCAGAuucgAGCCC-GCu -3'
miRNA:   3'- cCUCUG-UGGGGuaCGUCU----UCGGGuCG- -5'
11605 5' -56 NC_003085.1 + 7082 0.69 0.464377
Target:  5'- -cAGugGCCCCAUGguGAGcGCCauccucgcCGGCc -3'
miRNA:   3'- ccUCugUGGGGUACguCUU-CGG--------GUCG- -5'
11605 5' -56 NC_003085.1 + 899 0.69 0.471453
Target:  5'- aGGGGCAUCCCGUGCcaacccgcucgGGAgaggaggacuggaaGGCCCGcGCc -3'
miRNA:   3'- cCUCUGUGGGGUACG-----------UCU--------------UCGGGU-CG- -5'
11605 5' -56 NC_003085.1 + 1031 0.69 0.474502
Target:  5'- cGGccuCGCCguCCAUGCGGAGGaagCCAGCg -3'
miRNA:   3'- -CCucuGUGG--GGUACGUCUUCg--GGUCG- -5'
11605 5' -56 NC_003085.1 + 20407 0.68 0.484737
Target:  5'- cGGAcACGCCCCAggGCuG-GGCCCAacGCu -3'
miRNA:   3'- -CCUcUGUGGGGUa-CGuCuUCGGGU--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.