miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11605 5' -56 NC_003085.1 + 42669 0.69 0.454366
Target:  5'- ---uGCACCgCCGUGCG--GGCCCGGUa -3'
miRNA:   3'- ccucUGUGG-GGUACGUcuUCGGGUCG- -5'
11605 5' -56 NC_003085.1 + 26562 0.73 0.261465
Target:  5'- cGGAGACGCCgaacgCCGacGCAccGGAGUCCGGCg -3'
miRNA:   3'- -CCUCUGUGG-----GGUa-CGU--CUUCGGGUCG- -5'
11605 5' -56 NC_003085.1 + 23453 0.72 0.304484
Target:  5'- aGGGACGC---AUGaCGGAGGCCCAGCg -3'
miRNA:   3'- cCUCUGUGgggUAC-GUCUUCGGGUCG- -5'
11605 5' -56 NC_003085.1 + 32846 0.72 0.309843
Target:  5'- cGAGAgGCCgCGcGCcgcgggaccgcccgGGAGGCCCAGCg -3'
miRNA:   3'- cCUCUgUGGgGUaCG--------------UCUUCGGGUCG- -5'
11605 5' -56 NC_003085.1 + 2358 0.71 0.327954
Target:  5'- gGGAGGCGCa--GUGC-GAGGCCgCGGCg -3'
miRNA:   3'- -CCUCUGUGgggUACGuCUUCGG-GUCG- -5'
11605 5' -56 NC_003085.1 + 42454 0.71 0.369978
Target:  5'- gGGAG-CGgUCCGUGUcGAGGCCCguGGCg -3'
miRNA:   3'- -CCUCuGUgGGGUACGuCUUCGGG--UCG- -5'
11605 5' -56 NC_003085.1 + 41836 0.7 0.406153
Target:  5'- ---aGCGCCCCAUG-AGucccGCCCGGCg -3'
miRNA:   3'- ccucUGUGGGGUACgUCuu--CGGGUCG- -5'
11605 5' -56 NC_003085.1 + 22911 0.7 0.425055
Target:  5'- cGGAGGCugCCgGgGC-GAAGCCCuccgaGGCc -3'
miRNA:   3'- -CCUCUGugGGgUaCGuCUUCGGG-----UCG- -5'
11605 5' -56 NC_003085.1 + 16533 0.69 0.454366
Target:  5'- --cGACACCCUuUGCccGAAGUgCAGCg -3'
miRNA:   3'- ccuCUGUGGGGuACGu-CUUCGgGUCG- -5'
11605 5' -56 NC_003085.1 + 35808 0.74 0.229508
Target:  5'- uGGGGuuGCGCuCCCGgaggagccGCAGAAGCuCCGGCg -3'
miRNA:   3'- -CCUC--UGUG-GGGUa-------CGUCUUCG-GGUCG- -5'
11605 5' -56 NC_003085.1 + 32680 0.74 0.229508
Target:  5'- aGAGACGCCCCucaacaagGUGCGGAaaGGCauugCGGCa -3'
miRNA:   3'- cCUCUGUGGGG--------UACGUCU--UCGg---GUCG- -5'
11605 5' -56 NC_003085.1 + 49099 0.74 0.223526
Target:  5'- aGGAGGgGCCCCucGUGCugacGggGCcCCGGUg -3'
miRNA:   3'- -CCUCUgUGGGG--UACGu---CuuCG-GGUCG- -5'
11605 5' -56 NC_003085.1 + 11265 0.83 0.057881
Target:  5'- cGGuGACACCUCGaagGCAGAgugGGCCCGGCu -3'
miRNA:   3'- -CCuCUGUGGGGUa--CGUCU---UCGGGUCG- -5'
11605 5' -56 NC_003085.1 + 21960 0.79 0.099977
Target:  5'- gGGGGugGCUCCGUuggcucaGCAGguGCCCGGCa -3'
miRNA:   3'- -CCUCugUGGGGUA-------CGUCuuCGGGUCG- -5'
11605 5' -56 NC_003085.1 + 25543 0.79 0.106144
Target:  5'- cGGAGGCugCCCAUagcggGCAGAAGCa-GGCg -3'
miRNA:   3'- -CCUCUGugGGGUA-----CGUCUUCGggUCG- -5'
11605 5' -56 NC_003085.1 + 45637 0.76 0.157216
Target:  5'- aGAGGCGCaCCUGUuugGCuguGAGGCCCAGCa -3'
miRNA:   3'- cCUCUGUG-GGGUA---CGu--CUUCGGGUCG- -5'
11605 5' -56 NC_003085.1 + 31612 0.75 0.192438
Target:  5'- aGGAGGCACCggCCgcggggccugaagucGUGCcuGAGCCCAGCc -3'
miRNA:   3'- -CCUCUGUGG--GG---------------UACGucUUCGGGUCG- -5'
11605 5' -56 NC_003085.1 + 22095 0.75 0.200912
Target:  5'- aGAGGCGCagaagcaggccgCCCA-GCAG-AGCCCGGCg -3'
miRNA:   3'- cCUCUGUG------------GGGUaCGUCuUCGGGUCG- -5'
11605 5' -56 NC_003085.1 + 13818 0.75 0.206372
Target:  5'- aGGuGGCGCCaugaCGUGCAGAcgccGCCCAGg -3'
miRNA:   3'- -CCuCUGUGGg---GUACGUCUu---CGGGUCg -5'
11605 5' -56 NC_003085.1 + 41758 0.75 0.206372
Target:  5'- -cGGACGCCCgGccaGCcuGGAAGCCCAGCc -3'
miRNA:   3'- ccUCUGUGGGgUa--CG--UCUUCGGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.