Results 1 - 20 of 84 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11605 | 5' | -56 | NC_003085.1 | + | 39766 | 0.66 | 0.658182 |
Target: 5'- --cGGCGCUCCAgucUGCAGGGaCgCCAGCc -3' miRNA: 3'- ccuCUGUGGGGU---ACGUCUUcG-GGUCG- -5' |
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11605 | 5' | -56 | NC_003085.1 | + | 21755 | 0.68 | 0.537362 |
Target: 5'- cGAGGCGCgaCAgcggGCGGAcGCCCAGa -3' miRNA: 3'- cCUCUGUGggGUa---CGUCUuCGGGUCg -5' |
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11605 | 5' | -56 | NC_003085.1 | + | 24795 | 0.68 | 0.495076 |
Target: 5'- uGGAGAggaACUUCAggcUGCGGAAGCCgAGg -3' miRNA: 3'- -CCUCUg--UGGGGU---ACGUCUUCGGgUCg -5' |
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11605 | 5' | -56 | NC_003085.1 | + | 14985 | 0.78 | 0.115576 |
Target: 5'- gGGAGGCGCCCCAggGCAGcguCCCAGa -3' miRNA: 3'- -CCUCUGUGGGGUa-CGUCuucGGGUCg -5' |
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11605 | 5' | -56 | NC_003085.1 | + | 6161 | 0.66 | 0.63605 |
Target: 5'- cGGGACugguggaCCUGUGCuccauGCCCAGCa -3' miRNA: 3'- cCUCUGug-----GGGUACGucuu-CGGGUCG- -5' |
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11605 | 5' | -56 | NC_003085.1 | + | 25074 | 0.66 | 0.63605 |
Target: 5'- --cGGCacgGCCCCGUcCAGGccauugauGGCCCGGCc -3' miRNA: 3'- ccuCUG---UGGGGUAcGUCU--------UCGGGUCG- -5' |
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11605 | 5' | -56 | NC_003085.1 | + | 24593 | 0.66 | 0.613903 |
Target: 5'- -uGGGCGCCgC-UGCAGGugagguugccGGCCCAGg -3' miRNA: 3'- ccUCUGUGGgGuACGUCU----------UCGGGUCg -5' |
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11605 | 5' | -56 | NC_003085.1 | + | 47164 | 0.66 | 0.60285 |
Target: 5'- aGGcAGGCcaGCgCCGUGCugccGGAGCCC-GCg -3' miRNA: 3'- -CC-UCUG--UGgGGUACGu---CUUCGGGuCG- -5' |
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11605 | 5' | -56 | NC_003085.1 | + | 20580 | 0.67 | 0.58522 |
Target: 5'- uGAGACGCCUgcgacugcugcucggCAgcgccGCGGAAGUCgGGCg -3' miRNA: 3'- cCUCUGUGGG---------------GUa----CGUCUUCGGgUCG- -5' |
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11605 | 5' | -56 | NC_003085.1 | + | 22453 | 0.67 | 0.547055 |
Target: 5'- -cAGGCACaccaaggCCCGUGCAccacucgcGGuAGCCCAGCc -3' miRNA: 3'- ccUCUGUG-------GGGUACGU--------CU-UCGGGUCG- -5' |
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11605 | 5' | -56 | NC_003085.1 | + | 29187 | 0.67 | 0.580827 |
Target: 5'- uGGGcuuCGCCUCAUccGcCGGAGGCaCCAGCg -3' miRNA: 3'- cCUCu--GUGGGGUA--C-GUCUUCG-GGUCG- -5' |
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11605 | 5' | -56 | NC_003085.1 | + | 5362 | 0.67 | 0.591821 |
Target: 5'- aGAGGCAUUCCGU-CGGcuGGCCgCGGCg -3' miRNA: 3'- cCUCUGUGGGGUAcGUCu-UCGG-GUCG- -5' |
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11605 | 5' | -56 | NC_003085.1 | + | 10706 | 0.66 | 0.658182 |
Target: 5'- cGGAgGGCACUCCGUGUccguGguGCCUacAGCc -3' miRNA: 3'- -CCU-CUGUGGGGUACGu---CuuCGGG--UCG- -5' |
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11605 | 5' | -56 | NC_003085.1 | + | 9208 | 0.67 | 0.580827 |
Target: 5'- gGGGGGCgggacguagGCCCCG-GCGGcgaaGAGCCC-GCc -3' miRNA: 3'- -CCUCUG---------UGGGGUaCGUC----UUCGGGuCG- -5' |
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11605 | 5' | -56 | NC_003085.1 | + | 45386 | 0.66 | 0.647123 |
Target: 5'- -cGGGCGCUCCAccaggagGCGGAGcGCCguCAGCg -3' miRNA: 3'- ccUCUGUGGGGUa------CGUCUU-CGG--GUCG- -5' |
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11605 | 5' | -56 | NC_003085.1 | + | 48487 | 0.66 | 0.599538 |
Target: 5'- uGGGACACggcggcguguccugCCCcgGCAGcGGCCUgucuGGCa -3' miRNA: 3'- cCUCUGUG--------------GGGuaCGUCuUCGGG----UCG- -5' |
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11605 | 5' | -56 | NC_003085.1 | + | 17471 | 0.67 | 0.57973 |
Target: 5'- gGGAGGCagcgccaGCCCCAgGCguaacGGggGCagucgCCAGCc -3' miRNA: 3'- -CCUCUG-------UGGGGUaCG-----UCuuCG-----GGUCG- -5' |
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11605 | 5' | -56 | NC_003085.1 | + | 26313 | 0.68 | 0.505513 |
Target: 5'- aGGGcGACACCaCC-UGCucGAAGCUCuGCg -3' miRNA: 3'- -CCU-CUGUGG-GGuACGu-CUUCGGGuCG- -5' |
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11605 | 5' | -56 | NC_003085.1 | + | 2788 | 0.66 | 0.647123 |
Target: 5'- cGGcGGCGCUCCAggcgGCGGcgaagcGCCuCGGCa -3' miRNA: 3'- -CCuCUGUGGGGUa---CGUCuu----CGG-GUCG- -5' |
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11605 | 5' | -56 | NC_003085.1 | + | 16941 | 0.66 | 0.624974 |
Target: 5'- cGGugcGGUACUCC-UGCGGAAGCgCCGGUu -3' miRNA: 3'- -CCu--CUGUGGGGuACGUCUUCG-GGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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