miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11605 5' -56 NC_003085.1 + 49099 0.74 0.223526
Target:  5'- aGGAGGgGCCCCucGUGCugacGggGCcCCGGUg -3'
miRNA:   3'- -CCUCUgUGGGG--UACGu---CuuCG-GGUCG- -5'
11605 5' -56 NC_003085.1 + 48881 0.76 0.180315
Target:  5'- cGAGACACCCUgcgGCGGggGCCgCccuGCa -3'
miRNA:   3'- cCUCUGUGGGGua-CGUCuuCGG-Gu--CG- -5'
11605 5' -56 NC_003085.1 + 48487 0.66 0.599538
Target:  5'- uGGGACACggcggcguguccugCCCcgGCAGcGGCCUgucuGGCa -3'
miRNA:   3'- cCUCUGUG--------------GGGuaCGUCuUCGGG----UCG- -5'
11605 5' -56 NC_003085.1 + 48102 0.67 0.580827
Target:  5'- gGGAGGgAUguagagCCCAgGCGGAAGCCguccguacucCAGCg -3'
miRNA:   3'- -CCUCUgUG------GGGUaCGUCUUCGG----------GUCG- -5'
11605 5' -56 NC_003085.1 + 47210 0.7 0.396902
Target:  5'- cGAGGCcCCCCGguggGCAGGcauugcGCaCCAGCg -3'
miRNA:   3'- cCUCUGuGGGGUa---CGUCUu-----CG-GGUCG- -5'
11605 5' -56 NC_003085.1 + 47164 0.66 0.60285
Target:  5'- aGGcAGGCcaGCgCCGUGCugccGGAGCCC-GCg -3'
miRNA:   3'- -CC-UCUG--UGgGGUACGu---CUUCGGGuCG- -5'
11605 5' -56 NC_003085.1 + 45637 0.76 0.157216
Target:  5'- aGAGGCGCaCCUGUuugGCuguGAGGCCCAGCa -3'
miRNA:   3'- cCUCUGUG-GGGUA---CGu--CUUCGGGUCG- -5'
11605 5' -56 NC_003085.1 + 45386 0.66 0.647123
Target:  5'- -cGGGCGCUCCAccaggagGCGGAGcGCCguCAGCg -3'
miRNA:   3'- ccUCUGUGGGGUa------CGUCUU-CGG--GUCG- -5'
11605 5' -56 NC_003085.1 + 44494 0.69 0.454366
Target:  5'- uGAG-CACCUCGUccgucuucugcGCGGugguGCCCAGCa -3'
miRNA:   3'- cCUCuGUGGGGUA-----------CGUCuu--CGGGUCG- -5'
11605 5' -56 NC_003085.1 + 42669 0.69 0.454366
Target:  5'- ---uGCACCgCCGUGCG--GGCCCGGUa -3'
miRNA:   3'- ccucUGUGG-GGUACGUcuUCGGGUCG- -5'
11605 5' -56 NC_003085.1 + 42454 0.71 0.369978
Target:  5'- gGGAG-CGgUCCGUGUcGAGGCCCguGGCg -3'
miRNA:   3'- -CCUCuGUgGGGUACGuCUUCGGG--UCG- -5'
11605 5' -56 NC_003085.1 + 41836 0.7 0.406153
Target:  5'- ---aGCGCCCCAUG-AGucccGCCCGGCg -3'
miRNA:   3'- ccucUGUGGGGUACgUCuu--CGGGUCG- -5'
11605 5' -56 NC_003085.1 + 41758 0.75 0.206372
Target:  5'- -cGGACGCCCgGccaGCcuGGAAGCCCAGCc -3'
miRNA:   3'- ccUCUGUGGGgUa--CG--UCUUCGGGUCG- -5'
11605 5' -56 NC_003085.1 + 41270 0.67 0.569876
Target:  5'- uGGAcuGGCGggCCAUGCAcAGcGCCCAGCg -3'
miRNA:   3'- -CCU--CUGUggGGUACGUcUU-CGGGUCG- -5'
11605 5' -56 NC_003085.1 + 41095 0.67 0.558976
Target:  5'- -cGGACugCCUAccuggacuggGUGGAGGCCCAGg -3'
miRNA:   3'- ccUCUGugGGGUa---------CGUCUUCGGGUCg -5'
11605 5' -56 NC_003085.1 + 40428 0.66 0.647123
Target:  5'- cGGAGGCGCgCUGccUGCcGccGUCCAGCc -3'
miRNA:   3'- -CCUCUGUGgGGU--ACGuCuuCGGGUCG- -5'
11605 5' -56 NC_003085.1 + 39899 1.02 0.002375
Target:  5'- aGGAGACACCCCAUGCAGAAG-CCAGCg -3'
miRNA:   3'- -CCUCUGUGGGGUACGUCUUCgGGUCG- -5'
11605 5' -56 NC_003085.1 + 39766 0.66 0.658182
Target:  5'- --cGGCGCUCCAgucUGCAGGGaCgCCAGCc -3'
miRNA:   3'- ccuCUGUGGGGU---ACGUCUUcG-GGUCG- -5'
11605 5' -56 NC_003085.1 + 39373 0.7 0.387788
Target:  5'- cGGuuccGACGCCggcgggggcUCAUGCGGAAGCaacCCAGCc -3'
miRNA:   3'- -CCu---CUGUGG---------GGUACGUCUUCG---GGUCG- -5'
11605 5' -56 NC_003085.1 + 38986 0.69 0.464377
Target:  5'- uGAGACgGCCCC--GCAGAuucgAGCCC-GCu -3'
miRNA:   3'- cCUCUG-UGGGGuaCGUCU----UCGGGuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.