miRNA display CGI


Results 41 - 44 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11606 3' -55.2 NC_003085.1 + 42740 0.71 0.393826
Target:  5'- --cGGGGCGAUgcgGGCGCGGuggacggcauccaUCGCCGCg -3'
miRNA:   3'- gacUUCCGCUGa--CCGUGUC-------------AGUGGUG- -5'
11606 3' -55.2 NC_003085.1 + 47905 0.67 0.614149
Target:  5'- aCUGcAGGCGAC-GcGCACGGccUCGCgACa -3'
miRNA:   3'- -GACuUCCGCUGaC-CGUGUC--AGUGgUG- -5'
11606 3' -55.2 NC_003085.1 + 48738 0.72 0.317271
Target:  5'- -cGGAGGCGACUgaGGCGCGGguggaccugcUCagGCCGCg -3'
miRNA:   3'- gaCUUCCGCUGA--CCGUGUC----------AG--UGGUG- -5'
11606 3' -55.2 NC_003085.1 + 48863 0.74 0.232601
Target:  5'- -aGGccGCGACgGGCuuGCAGUCGCCGCa -3'
miRNA:   3'- gaCUucCGCUGaCCG--UGUCAGUGGUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.