Results 21 - 40 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11606 | 3' | -55.2 | NC_003085.1 | + | 22622 | 0.67 | 0.614149 |
Target: 5'- -cGAGGGUGGCgggGGCACA--CGCCugGCg -3' miRNA: 3'- gaCUUCCGCUGa--CCGUGUcaGUGG--UG- -5' |
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11606 | 3' | -55.2 | NC_003085.1 | + | 22859 | 0.7 | 0.4329 |
Target: 5'- -aGGAGGCGAC-GGUcgaagaagaGCGuGUCGCCGCc -3' miRNA: 3'- gaCUUCCGCUGaCCG---------UGU-CAGUGGUG- -5' |
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11606 | 3' | -55.2 | NC_003085.1 | + | 23112 | 0.67 | 0.614149 |
Target: 5'- cCUGA--GCGAggcGGCGCAG-CACCGCa -3' miRNA: 3'- -GACUucCGCUga-CCGUGUCaGUGGUG- -5' |
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11606 | 3' | -55.2 | NC_003085.1 | + | 24269 | 0.7 | 0.4329 |
Target: 5'- aCUGcucGGCGACguUGGCGCucaUCGCCACc -3' miRNA: 3'- -GACuu-CCGCUG--ACCGUGuc-AGUGGUG- -5' |
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11606 | 3' | -55.2 | NC_003085.1 | + | 25017 | 0.67 | 0.591796 |
Target: 5'- -aGAAGGCGccGCUgGGCACcaUCACCcGCg -3' miRNA: 3'- gaCUUCCGC--UGA-CCGUGucAGUGG-UG- -5' |
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11606 | 3' | -55.2 | NC_003085.1 | + | 26722 | 0.66 | 0.636567 |
Target: 5'- -gGgcGGUGAC-GGCGCGG-CGCCGg -3' miRNA: 3'- gaCuuCCGCUGaCCGUGUCaGUGGUg -5' |
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11606 | 3' | -55.2 | NC_003085.1 | + | 28178 | 0.67 | 0.625354 |
Target: 5'- cCUGGgccAGGaCGAagucugGGCGCGG-CACCACc -3' miRNA: 3'- -GACU---UCC-GCUga----CCGUGUCaGUGGUG- -5' |
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11606 | 3' | -55.2 | NC_003085.1 | + | 29156 | 0.68 | 0.547582 |
Target: 5'- gUGAAGGUGGCgGGCGCGuugggCACgGCc -3' miRNA: 3'- gACUUCCGCUGaCCGUGUca---GUGgUG- -5' |
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11606 | 3' | -55.2 | NC_003085.1 | + | 29253 | 0.67 | 0.591796 |
Target: 5'- -gGAAGGCGuccgcgucgugGCUGGCcCAGUCgugcACCGg -3' miRNA: 3'- gaCUUCCGC-----------UGACCGuGUCAG----UGGUg -5' |
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11606 | 3' | -55.2 | NC_003085.1 | + | 30488 | 0.7 | 0.423161 |
Target: 5'- -cGAAGGCGuuGCU-GCGCAGgaagcgCGCCACc -3' miRNA: 3'- gaCUUCCGC--UGAcCGUGUCa-----GUGGUG- -5' |
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11606 | 3' | -55.2 | NC_003085.1 | + | 31182 | 0.67 | 0.601842 |
Target: 5'- -gGuAGGGCGGaaGGCcucauugGCGGUUACCGCg -3' miRNA: 3'- gaC-UUCCGCUgaCCG-------UGUCAGUGGUG- -5' |
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11606 | 3' | -55.2 | NC_003085.1 | + | 32139 | 0.71 | 0.358846 |
Target: 5'- -cGggGGCGGCuggUGGCGCGGUggguUACgGCg -3' miRNA: 3'- gaCuuCCGCUG---ACCGUGUCA----GUGgUG- -5' |
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11606 | 3' | -55.2 | NC_003085.1 | + | 33210 | 0.75 | 0.203339 |
Target: 5'- cCUGGAGGCGGC-GGCGCAG-CACgAg -3' miRNA: 3'- -GACUUCCGCUGaCCGUGUCaGUGgUg -5' |
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11606 | 3' | -55.2 | NC_003085.1 | + | 33556 | 0.67 | 0.625354 |
Target: 5'- aUGAGGGUucGAUUGGCuguuccgccuggACAcGUCACUACc -3' miRNA: 3'- gACUUCCG--CUGACCG------------UGU-CAGUGGUG- -5' |
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11606 | 3' | -55.2 | NC_003085.1 | + | 34039 | 0.69 | 0.504464 |
Target: 5'- -cGGAuGGUGAC-GGCAUAcUCACCGCu -3' miRNA: 3'- gaCUU-CCGCUGaCCGUGUcAGUGGUG- -5' |
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11606 | 3' | -55.2 | NC_003085.1 | + | 36450 | 0.67 | 0.625354 |
Target: 5'- -gGAGGGCGGCgccucaUGGCGaGGUaguGCCACu -3' miRNA: 3'- gaCUUCCGCUG------ACCGUgUCAg--UGGUG- -5' |
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11606 | 3' | -55.2 | NC_003085.1 | + | 36549 | 0.73 | 0.265327 |
Target: 5'- -cGAuucuGGCGGCcgUGGCGgGGUCGCCAUu -3' miRNA: 3'- gaCUu---CCGCUG--ACCGUgUCAGUGGUG- -5' |
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11606 | 3' | -55.2 | NC_003085.1 | + | 39024 | 0.66 | 0.658967 |
Target: 5'- -aGGAGGCGAC-GGCAUgcguGGgcgagCGCUGCg -3' miRNA: 3'- gaCUUCCGCUGaCCGUG----UCa----GUGGUG- -5' |
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11606 | 3' | -55.2 | NC_003085.1 | + | 39133 | 0.74 | 0.226478 |
Target: 5'- -gGGAGGCGACgUGGCGgGGgccgCAUCGCa -3' miRNA: 3'- gaCUUCCGCUG-ACCGUgUCa---GUGGUG- -5' |
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11606 | 3' | -55.2 | NC_003085.1 | + | 40518 | 1.09 | 0.000738 |
Target: 5'- gCUGAAGGCGACUGGCACAGUCACCACu -3' miRNA: 3'- -GACUUCCGCUGACCGUGUCAGUGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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