miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11606 3' -55.2 NC_003085.1 + 1629 0.68 0.547582
Target:  5'- aUGAcgcGGaCGACUGGCACA---ACCGCa -3'
miRNA:   3'- gACUu--CC-GCUGACCGUGUcagUGGUG- -5'
11606 3' -55.2 NC_003085.1 + 2075 0.67 0.625354
Target:  5'- -cGGAcGGUGACgcgacGaGCGCAGcCGCCGCa -3'
miRNA:   3'- gaCUU-CCGCUGa----C-CGUGUCaGUGGUG- -5'
11606 3' -55.2 NC_003085.1 + 3993 0.67 0.625354
Target:  5'- -cGAGcGCGACacGGCACAGUgGCC-Ca -3'
miRNA:   3'- gaCUUcCGCUGa-CCGUGUCAgUGGuG- -5'
11606 3' -55.2 NC_003085.1 + 5322 0.72 0.325288
Target:  5'- cCUGAAGGCGACcgagaaGCGC-GUgGCCGCg -3'
miRNA:   3'- -GACUUCCGCUGac----CGUGuCAgUGGUG- -5'
11606 3' -55.2 NC_003085.1 + 7272 0.68 0.515115
Target:  5'- gUGAAGGaGACgUGGCGCAc-CGCCGCc -3'
miRNA:   3'- gACUUCCgCUG-ACCGUGUcaGUGGUG- -5'
11606 3' -55.2 NC_003085.1 + 7330 0.66 0.681265
Target:  5'- -cGGAGGCGGCUgaGGaCGCGGgcuaCACgCGCc -3'
miRNA:   3'- gaCUUCCGCUGA--CC-GUGUCa---GUG-GUG- -5'
11606 3' -55.2 NC_003085.1 + 7484 0.66 0.669019
Target:  5'- gCUGGAGGUGACgGGCguccgcgucgaGCGGUugcaggaCAUCACc -3'
miRNA:   3'- -GACUUCCGCUGaCCG-----------UGUCA-------GUGGUG- -5'
11606 3' -55.2 NC_003085.1 + 8938 0.67 0.625354
Target:  5'- -gGAcaguGGUGACUGuGC-CAGUCGCCu- -3'
miRNA:   3'- gaCUu---CCGCUGAC-CGuGUCAGUGGug -5'
11606 3' -55.2 NC_003085.1 + 9138 0.67 0.602959
Target:  5'- uCUGGGaGCGGCaccUGGCGgAGcUCGCCGCc -3'
miRNA:   3'- -GACUUcCGCUG---ACCGUgUC-AGUGGUG- -5'
11606 3' -55.2 NC_003085.1 + 12034 0.67 0.614149
Target:  5'- -gGuuGGCGcucgcuagccgcACUGGCGCaucGGUCACUACc -3'
miRNA:   3'- gaCuuCCGC------------UGACCGUG---UCAGUGGUG- -5'
11606 3' -55.2 NC_003085.1 + 12373 0.66 0.636567
Target:  5'- aCUGGAG-CGACUGcGCGCcGUcCACCuGCa -3'
miRNA:   3'- -GACUUCcGCUGAC-CGUGuCA-GUGG-UG- -5'
11606 3' -55.2 NC_003085.1 + 15524 0.69 0.483456
Target:  5'- uUGAA-GCGACUGGCGCAGgcgguugaGCC-Cg -3'
miRNA:   3'- gACUUcCGCUGACCGUGUCag------UGGuG- -5'
11606 3' -55.2 NC_003085.1 + 16458 0.67 0.602959
Target:  5'- --cGAGGCGAC-GGCAguGUCcgaccugcgcGCCGCc -3'
miRNA:   3'- gacUUCCGCUGaCCGUguCAG----------UGGUG- -5'
11606 3' -55.2 NC_003085.1 + 17489 0.67 0.625354
Target:  5'- ---cAGGCGuaACgGGgGCAGUCGCCAg -3'
miRNA:   3'- gacuUCCGC--UGaCCgUGUCAGUGGUg -5'
11606 3' -55.2 NC_003085.1 + 17665 0.7 0.4329
Target:  5'- -gGGAGGCG-CUGGCGCuGagACCGa -3'
miRNA:   3'- gaCUUCCGCuGACCGUGuCagUGGUg -5'
11606 3' -55.2 NC_003085.1 + 17914 0.66 0.669019
Target:  5'- uCUGGAGGUGGCaugucgagcccugUGGUGCcGUCuucCCACu -3'
miRNA:   3'- -GACUUCCGCUG-------------ACCGUGuCAGu--GGUG- -5'
11606 3' -55.2 NC_003085.1 + 18685 0.67 0.580667
Target:  5'- gCUGAGGGUGACgccGGU-CAGUgGCC-Cg -3'
miRNA:   3'- -GACUUCCGCUGa--CCGuGUCAgUGGuG- -5'
11606 3' -55.2 NC_003085.1 + 19206 0.75 0.214641
Target:  5'- cCUG-GGGCGGCgggGGCugGG-CGCCGCg -3'
miRNA:   3'- -GACuUCCGCUGa--CCGugUCaGUGGUG- -5'
11606 3' -55.2 NC_003085.1 + 20065 0.67 0.580667
Target:  5'- gCUGGccGCG-CUGGCGCAGcaacucCGCCAUg -3'
miRNA:   3'- -GACUucCGCuGACCGUGUCa-----GUGGUG- -5'
11606 3' -55.2 NC_003085.1 + 20834 0.74 0.232601
Target:  5'- cCUGGaugAGGCGACcGGCGCcgAGcUCGCCGCu -3'
miRNA:   3'- -GACU---UCCGCUGaCCGUG--UC-AGUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.