miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11606 3' -55.2 NC_003085.1 + 48863 0.74 0.232601
Target:  5'- -aGGccGCGACgGGCuuGCAGUCGCCGCa -3'
miRNA:   3'- gaCUucCGCUGaCCG--UGUCAGUGGUG- -5'
11606 3' -55.2 NC_003085.1 + 48738 0.72 0.317271
Target:  5'- -cGGAGGCGACUgaGGCGCGGguggaccugcUCagGCCGCg -3'
miRNA:   3'- gaCUUCCGCUGA--CCGUGUC----------AG--UGGUG- -5'
11606 3' -55.2 NC_003085.1 + 47905 0.67 0.614149
Target:  5'- aCUGcAGGCGAC-GcGCACGGccUCGCgACa -3'
miRNA:   3'- -GACuUCCGCUGaC-CGUGUC--AGUGgUG- -5'
11606 3' -55.2 NC_003085.1 + 42740 0.71 0.393826
Target:  5'- --cGGGGCGAUgcgGGCGCGGuggacggcauccaUCGCCGCg -3'
miRNA:   3'- gacUUCCGCUGa--CCGUGUC-------------AGUGGUG- -5'
11606 3' -55.2 NC_003085.1 + 40518 1.09 0.000738
Target:  5'- gCUGAAGGCGACUGGCACAGUCACCACu -3'
miRNA:   3'- -GACUUCCGCUGACCGUGUCAGUGGUG- -5'
11606 3' -55.2 NC_003085.1 + 39133 0.74 0.226478
Target:  5'- -gGGAGGCGACgUGGCGgGGgccgCAUCGCa -3'
miRNA:   3'- gaCUUCCGCUG-ACCGUgUCa---GUGGUG- -5'
11606 3' -55.2 NC_003085.1 + 39024 0.66 0.658967
Target:  5'- -aGGAGGCGAC-GGCAUgcguGGgcgagCGCUGCg -3'
miRNA:   3'- gaCUUCCGCUGaCCGUG----UCa----GUGGUG- -5'
11606 3' -55.2 NC_003085.1 + 36549 0.73 0.265327
Target:  5'- -cGAuucuGGCGGCcgUGGCGgGGUCGCCAUu -3'
miRNA:   3'- gaCUu---CCGCUG--ACCGUgUCAGUGGUG- -5'
11606 3' -55.2 NC_003085.1 + 36450 0.67 0.625354
Target:  5'- -gGAGGGCGGCgccucaUGGCGaGGUaguGCCACu -3'
miRNA:   3'- gaCUUCCGCUG------ACCGUgUCAg--UGGUG- -5'
11606 3' -55.2 NC_003085.1 + 34039 0.69 0.504464
Target:  5'- -cGGAuGGUGAC-GGCAUAcUCACCGCu -3'
miRNA:   3'- gaCUU-CCGCUGaCCGUGUcAGUGGUG- -5'
11606 3' -55.2 NC_003085.1 + 33556 0.67 0.625354
Target:  5'- aUGAGGGUucGAUUGGCuguuccgccuggACAcGUCACUACc -3'
miRNA:   3'- gACUUCCG--CUGACCG------------UGU-CAGUGGUG- -5'
11606 3' -55.2 NC_003085.1 + 33210 0.75 0.203339
Target:  5'- cCUGGAGGCGGC-GGCGCAG-CACgAg -3'
miRNA:   3'- -GACUUCCGCUGaCCGUGUCaGUGgUg -5'
11606 3' -55.2 NC_003085.1 + 32139 0.71 0.358846
Target:  5'- -cGggGGCGGCuggUGGCGCGGUggguUACgGCg -3'
miRNA:   3'- gaCuuCCGCUG---ACCGUGUCA----GUGgUG- -5'
11606 3' -55.2 NC_003085.1 + 31182 0.67 0.601842
Target:  5'- -gGuAGGGCGGaaGGCcucauugGCGGUUACCGCg -3'
miRNA:   3'- gaC-UUCCGCUgaCCG-------UGUCAGUGGUG- -5'
11606 3' -55.2 NC_003085.1 + 30488 0.7 0.423161
Target:  5'- -cGAAGGCGuuGCU-GCGCAGgaagcgCGCCACc -3'
miRNA:   3'- gaCUUCCGC--UGAcCGUGUCa-----GUGGUG- -5'
11606 3' -55.2 NC_003085.1 + 29253 0.67 0.591796
Target:  5'- -gGAAGGCGuccgcgucgugGCUGGCcCAGUCgugcACCGg -3'
miRNA:   3'- gaCUUCCGC-----------UGACCGuGUCAG----UGGUg -5'
11606 3' -55.2 NC_003085.1 + 29156 0.68 0.547582
Target:  5'- gUGAAGGUGGCgGGCGCGuugggCACgGCc -3'
miRNA:   3'- gACUUCCGCUGaCCGUGUca---GUGgUG- -5'
11606 3' -55.2 NC_003085.1 + 28178 0.67 0.625354
Target:  5'- cCUGGgccAGGaCGAagucugGGCGCGG-CACCACc -3'
miRNA:   3'- -GACU---UCC-GCUga----CCGUGUCaGUGGUG- -5'
11606 3' -55.2 NC_003085.1 + 26722 0.66 0.636567
Target:  5'- -gGgcGGUGAC-GGCGCGG-CGCCGg -3'
miRNA:   3'- gaCuuCCGCUGaCCGUGUCaGUGGUg -5'
11606 3' -55.2 NC_003085.1 + 25017 0.67 0.591796
Target:  5'- -aGAAGGCGccGCUgGGCACcaUCACCcGCg -3'
miRNA:   3'- gaCUUCCGC--UGA-CCGUGucAGUGG-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.