miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11606 3' -55.2 NC_003085.1 + 40518 1.09 0.000738
Target:  5'- gCUGAAGGCGACUGGCACAGUCACCACu -3'
miRNA:   3'- -GACUUCCGCUGACCGUGUCAGUGGUG- -5'
11606 3' -55.2 NC_003085.1 + 33210 0.75 0.203339
Target:  5'- cCUGGAGGCGGC-GGCGCAG-CACgAg -3'
miRNA:   3'- -GACUUCCGCUGaCCGUGUCaGUGgUg -5'
11606 3' -55.2 NC_003085.1 + 19206 0.75 0.214641
Target:  5'- cCUG-GGGCGGCgggGGCugGG-CGCCGCg -3'
miRNA:   3'- -GACuUCCGCUGa--CCGugUCaGUGGUG- -5'
11606 3' -55.2 NC_003085.1 + 39133 0.74 0.226478
Target:  5'- -gGGAGGCGACgUGGCGgGGgccgCAUCGCa -3'
miRNA:   3'- gaCUUCCGCUG-ACCGUgUCa---GUGGUG- -5'
11606 3' -55.2 NC_003085.1 + 48863 0.74 0.232601
Target:  5'- -aGGccGCGACgGGCuuGCAGUCGCCGCa -3'
miRNA:   3'- gaCUucCGCUGaCCG--UGUCAGUGGUG- -5'
11606 3' -55.2 NC_003085.1 + 20834 0.74 0.232601
Target:  5'- cCUGGaugAGGCGACcGGCGCcgAGcUCGCCGCu -3'
miRNA:   3'- -GACU---UCCGCUGaCCGUG--UC-AGUGGUG- -5'
11606 3' -55.2 NC_003085.1 + 36549 0.73 0.265327
Target:  5'- -cGAuucuGGCGGCcgUGGCGgGGUCGCCAUu -3'
miRNA:   3'- gaCUu---CCGCUG--ACCGUgUCAGUGGUG- -5'
11606 3' -55.2 NC_003085.1 + 48738 0.72 0.317271
Target:  5'- -cGGAGGCGACUgaGGCGCGGguggaccugcUCagGCCGCg -3'
miRNA:   3'- gaCUUCCGCUGA--CCGUGUC----------AG--UGGUG- -5'
11606 3' -55.2 NC_003085.1 + 5322 0.72 0.325288
Target:  5'- cCUGAAGGCGACcgagaaGCGC-GUgGCCGCg -3'
miRNA:   3'- -GACUUCCGCUGac----CGUGuCAgUGGUG- -5'
11606 3' -55.2 NC_003085.1 + 32139 0.71 0.358846
Target:  5'- -cGggGGCGGCuggUGGCGCGGUggguUACgGCg -3'
miRNA:   3'- gaCuuCCGCUG---ACCGUGUCA----GUGgUG- -5'
11606 3' -55.2 NC_003085.1 + 42740 0.71 0.393826
Target:  5'- --cGGGGCGAUgcgGGCGCGGuggacggcauccaUCGCCGCg -3'
miRNA:   3'- gacUUCCGCUGa--CCGUGUC-------------AGUGGUG- -5'
11606 3' -55.2 NC_003085.1 + 30488 0.7 0.423161
Target:  5'- -cGAAGGCGuuGCU-GCGCAGgaagcgCGCCACc -3'
miRNA:   3'- gaCUUCCGC--UGAcCGUGUCa-----GUGGUG- -5'
11606 3' -55.2 NC_003085.1 + 17665 0.7 0.4329
Target:  5'- -gGGAGGCG-CUGGCGCuGagACCGa -3'
miRNA:   3'- gaCUUCCGCuGACCGUGuCagUGGUg -5'
11606 3' -55.2 NC_003085.1 + 22859 0.7 0.4329
Target:  5'- -aGGAGGCGAC-GGUcgaagaagaGCGuGUCGCCGCc -3'
miRNA:   3'- gaCUUCCGCUGaCCG---------UGU-CAGUGGUG- -5'
11606 3' -55.2 NC_003085.1 + 24269 0.7 0.4329
Target:  5'- aCUGcucGGCGACguUGGCGCucaUCGCCACc -3'
miRNA:   3'- -GACuu-CCGCUG--ACCGUGuc-AGUGGUG- -5'
11606 3' -55.2 NC_003085.1 + 15524 0.69 0.483456
Target:  5'- uUGAA-GCGACUGGCGCAGgcgguugaGCC-Cg -3'
miRNA:   3'- gACUUcCGCUGACCGUGUCag------UGGuG- -5'
11606 3' -55.2 NC_003085.1 + 34039 0.69 0.504464
Target:  5'- -cGGAuGGUGAC-GGCAUAcUCACCGCu -3'
miRNA:   3'- gaCUU-CCGCUGaCCGUGUcAGUGGUG- -5'
11606 3' -55.2 NC_003085.1 + 7272 0.68 0.515115
Target:  5'- gUGAAGGaGACgUGGCGCAc-CGCCGCc -3'
miRNA:   3'- gACUUCCgCUG-ACCGUGUcaGUGGUG- -5'
11606 3' -55.2 NC_003085.1 + 1629 0.68 0.547582
Target:  5'- aUGAcgcGGaCGACUGGCACA---ACCGCa -3'
miRNA:   3'- gACUu--CC-GCUGACCGUGUcagUGGUG- -5'
11606 3' -55.2 NC_003085.1 + 29156 0.68 0.547582
Target:  5'- gUGAAGGUGGCgGGCGCGuugggCACgGCc -3'
miRNA:   3'- gACUUCCGCUGaCCGUGUca---GUGgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.