miRNA display CGI


Results 41 - 60 of 92 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11606 5' -59.3 NC_003085.1 + 33263 0.7 0.316143
Target:  5'- aCGGCGAgGaGCGCGGUcACGGCucaccucgaaccagCGCGGc -3'
miRNA:   3'- -GUUGCUgC-CGUGCCAcUGCCG--------------GCGCC- -5'
11606 5' -59.3 NC_003085.1 + 39027 0.7 0.318401
Target:  5'- aGGCGACGGCAUGcGUgGGCGagcGCUGCGc -3'
miRNA:   3'- gUUGCUGCCGUGC-CA-CUGC---CGGCGCc -5'
11606 5' -59.3 NC_003085.1 + 10713 0.7 0.318401
Target:  5'- -cGCGA-GGCACuGGcUGACGGCaaGCGGa -3'
miRNA:   3'- guUGCUgCCGUG-CC-ACUGCCGg-CGCC- -5'
11606 5' -59.3 NC_003085.1 + 48654 0.7 0.318401
Target:  5'- -uGCGGCGGCACGcG-GACGuccaCCGUGGc -3'
miRNA:   3'- guUGCUGCCGUGC-CaCUGCc---GGCGCC- -5'
11606 5' -59.3 NC_003085.1 + 33215 0.69 0.325245
Target:  5'- aGGCGGCGGCGCagcacgaGGaUGACGacgccaGCCGCGa -3'
miRNA:   3'- gUUGCUGCCGUG-------CC-ACUGC------CGGCGCc -5'
11606 5' -59.3 NC_003085.1 + 482 0.69 0.325245
Target:  5'- -cACGACGGCcaucagcGCGGagaUGAaGGCgCGCGGg -3'
miRNA:   3'- guUGCUGCCG-------UGCC---ACUgCCG-GCGCC- -5'
11606 5' -59.3 NC_003085.1 + 25342 0.69 0.333759
Target:  5'- gGugGAUGGCgcgcgcuuccggACGGUGACGggcacGCCGaCGGc -3'
miRNA:   3'- gUugCUGCCG------------UGCCACUGC-----CGGC-GCC- -5'
11606 5' -59.3 NC_003085.1 + 2348 0.69 0.34164
Target:  5'- -uGCGACauccgggaGGCGCaGUGcgaGGCCGCGGc -3'
miRNA:   3'- guUGCUG--------CCGUGcCACug-CCGGCGCC- -5'
11606 5' -59.3 NC_003085.1 + 8449 0.69 0.349654
Target:  5'- cCAGCGACGccCACGGcgaUGACGacGCCGCuGGg -3'
miRNA:   3'- -GUUGCUGCc-GUGCC---ACUGC--CGGCG-CC- -5'
11606 5' -59.3 NC_003085.1 + 286 0.69 0.36608
Target:  5'- gCAGCGGCGGCA-GGaccgGGCGGCCucCGa -3'
miRNA:   3'- -GUUGCUGCCGUgCCa---CUGCCGGc-GCc -5'
11606 5' -59.3 NC_003085.1 + 19326 0.68 0.391699
Target:  5'- gCGugGGCuGCugGG-GcCGGCgGCGGa -3'
miRNA:   3'- -GUugCUGcCGugCCaCuGCCGgCGCC- -5'
11606 5' -59.3 NC_003085.1 + 3945 0.68 0.409415
Target:  5'- gCGGCGauguugucGCGGCcCGGggauggagccaGACGGCCGCGc -3'
miRNA:   3'- -GUUGC--------UGCCGuGCCa----------CUGCCGGCGCc -5'
11606 5' -59.3 NC_003085.1 + 36009 0.68 0.409415
Target:  5'- -cGCGACaGCuugGCGGaUGGCGGCCaUGGg -3'
miRNA:   3'- guUGCUGcCG---UGCC-ACUGCCGGcGCC- -5'
11606 5' -59.3 NC_003085.1 + 45024 0.68 0.409415
Target:  5'- --cCGACGGCgACGGUGAgGagcaCCGuCGGg -3'
miRNA:   3'- guuGCUGCCG-UGCCACUgCc---GGC-GCC- -5'
11606 5' -59.3 NC_003085.1 + 32135 0.68 0.409415
Target:  5'- gCGACGGgGGCGgcUGGUGGCG-CgGUGGg -3'
miRNA:   3'- -GUUGCUgCCGU--GCCACUGCcGgCGCC- -5'
11606 5' -59.3 NC_003085.1 + 47501 0.68 0.409415
Target:  5'- -cGCGGCGGaaccuguCGGUGGCGaaGCCGCu- -3'
miRNA:   3'- guUGCUGCCgu-----GCCACUGC--CGGCGcc -5'
11606 5' -59.3 NC_003085.1 + 47980 0.68 0.409415
Target:  5'- ---aGGCuGGCgACGGUGACGGgCgGCGa -3'
miRNA:   3'- guugCUG-CCG-UGCCACUGCC-GgCGCc -5'
11606 5' -59.3 NC_003085.1 + 37069 0.68 0.418458
Target:  5'- cCGACGACGuGCGgaugcaGGUgGACGGCgCGCa- -3'
miRNA:   3'- -GUUGCUGC-CGUg-----CCA-CUGCCG-GCGcc -5'
11606 5' -59.3 NC_003085.1 + 28210 0.67 0.42486
Target:  5'- -cGCGGaguUGGCGCcagugucggccaugGGUGGCGGCaGCGGu -3'
miRNA:   3'- guUGCU---GCCGUG--------------CCACUGCCGgCGCC- -5'
11606 5' -59.3 NC_003085.1 + 39874 0.67 0.427621
Target:  5'- gGAUGGCGGagagacgcCGGUGcuCGGCgGCGGc -3'
miRNA:   3'- gUUGCUGCCgu------GCCACu-GCCGgCGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.