Results 41 - 60 of 92 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11606 | 5' | -59.3 | NC_003085.1 | + | 24354 | 0.79 | 0.07743 |
Target: 5'- aCGGCGACGGgACGGccuuUGGCGGCCG-GGc -3' miRNA: 3'- -GUUGCUGCCgUGCC----ACUGCCGGCgCC- -5' |
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11606 | 5' | -59.3 | NC_003085.1 | + | 24528 | 0.67 | 0.475142 |
Target: 5'- uGACGAaguugUGGuCGCGGUGcgugcGCGGC-GCGGa -3' miRNA: 3'- gUUGCU-----GCC-GUGCCAC-----UGCCGgCGCC- -5' |
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11606 | 5' | -59.3 | NC_003085.1 | + | 24706 | 0.73 | 0.188615 |
Target: 5'- gGACGGCGGCAUc--GGCGGCuuCGCGGg -3' miRNA: 3'- gUUGCUGCCGUGccaCUGCCG--GCGCC- -5' |
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11606 | 5' | -59.3 | NC_003085.1 | + | 25164 | 0.73 | 0.198636 |
Target: 5'- cCGGCGACcguGGCcUGGUGGCGGUgGCGa -3' miRNA: 3'- -GUUGCUG---CCGuGCCACUGCCGgCGCc -5' |
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11606 | 5' | -59.3 | NC_003085.1 | + | 25297 | 0.71 | 0.268864 |
Target: 5'- -cGCGACGGC-CGGccaggugGACGacGCCGUGGu -3' miRNA: 3'- guUGCUGCCGuGCCa------CUGC--CGGCGCC- -5' |
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11606 | 5' | -59.3 | NC_003085.1 | + | 25342 | 0.69 | 0.333759 |
Target: 5'- gGugGAUGGCgcgcgcuuccggACGGUGACGggcacGCCGaCGGc -3' miRNA: 3'- gUugCUGCCG------------UGCCACUGC-----CGGC-GCC- -5' |
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11606 | 5' | -59.3 | NC_003085.1 | + | 25447 | 0.72 | 0.213989 |
Target: 5'- gAGCGGCGGccgguuuCugGGUGGuCGGCCGCc- -3' miRNA: 3'- gUUGCUGCC-------GugCCACU-GCCGGCGcc -5' |
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11606 | 5' | -59.3 | NC_003085.1 | + | 25735 | 0.74 | 0.174418 |
Target: 5'- --uCGGCGcCACGGUGGgGGCCGgGGc -3' miRNA: 3'- guuGCUGCcGUGCCACUgCCGGCgCC- -5' |
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11606 | 5' | -59.3 | NC_003085.1 | + | 26221 | 0.76 | 0.123374 |
Target: 5'- ---gGGCGGCGCGGUGcgaagcgcgGCGGCCGUcuGGa -3' miRNA: 3'- guugCUGCCGUGCCAC---------UGCCGGCG--CC- -5' |
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11606 | 5' | -59.3 | NC_003085.1 | + | 26711 | 0.71 | 0.249613 |
Target: 5'- gAGCG-CGcGCaggGCGGUGACGGC-GCGGc -3' miRNA: 3'- gUUGCuGC-CG---UGCCACUGCCGgCGCC- -5' |
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11606 | 5' | -59.3 | NC_003085.1 | + | 27517 | 0.66 | 0.493882 |
Target: 5'- gCGGCGcCGGCAUGGaUGACucccucguGGCCaucuccgGCGGc -3' miRNA: 3'- -GUUGCuGCCGUGCC-ACUG--------CCGG-------CGCC- -5' |
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11606 | 5' | -59.3 | NC_003085.1 | + | 28017 | 0.67 | 0.435969 |
Target: 5'- uCAACGACGGCuACGuG-GACGGCguccuccUGuCGGa -3' miRNA: 3'- -GUUGCUGCCG-UGC-CaCUGCCG-------GC-GCC- -5' |
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11606 | 5' | -59.3 | NC_003085.1 | + | 28210 | 0.67 | 0.42486 |
Target: 5'- -cGCGGaguUGGCGCcagugucggccaugGGUGGCGGCaGCGGu -3' miRNA: 3'- guUGCU---GCCGUG--------------CCACUGCCGgCGCC- -5' |
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11606 | 5' | -59.3 | NC_003085.1 | + | 28309 | 0.66 | 0.504885 |
Target: 5'- gCAGC-AgGuGCGCGGUggGACGGgCGUGGg -3' miRNA: 3'- -GUUGcUgC-CGUGCCA--CUGCCgGCGCC- -5' |
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11606 | 5' | -59.3 | NC_003085.1 | + | 31659 | 0.67 | 0.455806 |
Target: 5'- ---aGGCGGCAcCGG-GGCGGgCgGUGGa -3' miRNA: 3'- guugCUGCCGU-GCCaCUGCC-GgCGCC- -5' |
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11606 | 5' | -59.3 | NC_003085.1 | + | 31777 | 0.66 | 0.494878 |
Target: 5'- gUAGCGuGCGGUugGGcGaaGCGGCC-CGGc -3' miRNA: 3'- -GUUGC-UGCCGugCCaC--UGCCGGcGCC- -5' |
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11606 | 5' | -59.3 | NC_003085.1 | + | 32028 | 0.73 | 0.183773 |
Target: 5'- -uGCGuacCGGCGCGGUGAUGGggGCGGc -3' miRNA: 3'- guUGCu--GCCGUGCCACUGCCggCGCC- -5' |
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11606 | 5' | -59.3 | NC_003085.1 | + | 32135 | 0.68 | 0.409415 |
Target: 5'- gCGACGGgGGCGgcUGGUGGCG-CgGUGGg -3' miRNA: 3'- -GUUGCUgCCGU--GCCACUGCcGgCGCC- -5' |
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11606 | 5' | -59.3 | NC_003085.1 | + | 33215 | 0.69 | 0.325245 |
Target: 5'- aGGCGGCGGCGCagcacgaGGaUGACGacgccaGCCGCGa -3' miRNA: 3'- gUUGCUGCCGUG-------CC-ACUGC------CGGCGCc -5' |
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11606 | 5' | -59.3 | NC_003085.1 | + | 33263 | 0.7 | 0.316143 |
Target: 5'- aCGGCGAgGaGCGCGGUcACGGCucaccucgaaccagCGCGGc -3' miRNA: 3'- -GUUGCUgC-CGUGCCAcUGCCG--------------GCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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