miRNA display CGI


Results 21 - 40 of 92 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11606 5' -59.3 NC_003085.1 + 10713 0.7 0.318401
Target:  5'- -cGCGA-GGCACuGGcUGACGGCaaGCGGa -3'
miRNA:   3'- guUGCUgCCGUG-CC-ACUGCCGg-CGCC- -5'
11606 5' -59.3 NC_003085.1 + 11342 0.67 0.475142
Target:  5'- gCGGCGAgccucaCGGCACcuccgagacgauGGUGGCGGCgC-CGGa -3'
miRNA:   3'- -GUUGCU------GCCGUG------------CCACUGCCG-GcGCC- -5'
11606 5' -59.3 NC_003085.1 + 11513 0.66 0.525153
Target:  5'- -uGCGGgugUGGUGCGGUuacCGGCCGCGc -3'
miRNA:   3'- guUGCU---GCCGUGCCAcu-GCCGGCGCc -5'
11606 5' -59.3 NC_003085.1 + 11769 0.74 0.156974
Target:  5'- -uACGACGGUACGGcGGCG-CCGCGc -3'
miRNA:   3'- guUGCUGCCGUGCCaCUGCcGGCGCc -5'
11606 5' -59.3 NC_003085.1 + 12001 0.72 0.220074
Target:  5'- uCAGCGuguuCGuGaauGCGGUGGCGGgCGCGGg -3'
miRNA:   3'- -GUUGCu---GC-Cg--UGCCACUGCCgGCGCC- -5'
11606 5' -59.3 NC_003085.1 + 12239 0.72 0.243454
Target:  5'- -cGCGGCGGCugGGccgccagaauUGAaGGCCGCuGGc -3'
miRNA:   3'- guUGCUGCCGugCC----------ACUgCCGGCG-CC- -5'
11606 5' -59.3 NC_003085.1 + 12292 0.79 0.079605
Target:  5'- -cGCGACGGCGCGGUGGuccgcugGGuuGCGGc -3'
miRNA:   3'- guUGCUGCCGUGCCACUg------CCggCGCC- -5'
11606 5' -59.3 NC_003085.1 + 12705 0.7 0.296369
Target:  5'- --cCGACGGCGaGGccGGCGGCCGaGGg -3'
miRNA:   3'- guuGCUGCCGUgCCa-CUGCCGGCgCC- -5'
11606 5' -59.3 NC_003085.1 + 15622 0.66 0.525153
Target:  5'- -uACGugGGC-CGGUGGcCGG--GCGGa -3'
miRNA:   3'- guUGCugCCGuGCCACU-GCCggCGCC- -5'
11606 5' -59.3 NC_003085.1 + 15928 0.71 0.27825
Target:  5'- gCGugGACGGCGugugacaggcucggcUGGUGGCgcucccuuGGCCGCuGGg -3'
miRNA:   3'- -GUugCUGCCGU---------------GCCACUG--------CCGGCG-CC- -5'
11606 5' -59.3 NC_003085.1 + 16735 0.67 0.465421
Target:  5'- -uGCGAUGGCAuccuCGGUGugGcgacgcacuguuGCCGCa- -3'
miRNA:   3'- guUGCUGCCGU----GCCACugC------------CGGCGcc -5'
11606 5' -59.3 NC_003085.1 + 16936 0.67 0.446298
Target:  5'- -cGCGACGGUGCGGU-ACucCUGCGGa -3'
miRNA:   3'- guUGCUGCCGUGCCAcUGccGGCGCC- -5'
11606 5' -59.3 NC_003085.1 + 18114 0.72 0.231515
Target:  5'- --uUGuCGGCGCGGgcggGACGGCCGgccUGGg -3'
miRNA:   3'- guuGCuGCCGUGCCa---CUGCCGGC---GCC- -5'
11606 5' -59.3 NC_003085.1 + 18339 0.73 0.209118
Target:  5'- gCAACGcgcugccuuACGGgGCGGUG-CaGGCCGUGGa -3'
miRNA:   3'- -GUUGC---------UGCCgUGCCACuG-CCGGCGCC- -5'
11606 5' -59.3 NC_003085.1 + 19326 0.68 0.391699
Target:  5'- gCGugGGCuGCugGG-GcCGGCgGCGGa -3'
miRNA:   3'- -GUugCUGcCGugCCaCuGCCGgCGCC- -5'
11606 5' -59.3 NC_003085.1 + 22480 0.74 0.174418
Target:  5'- aCAugGAgGGCACGGUGGCGaCgGaCGGc -3'
miRNA:   3'- -GUugCUgCCGUGCCACUGCcGgC-GCC- -5'
11606 5' -59.3 NC_003085.1 + 22570 0.75 0.144942
Target:  5'- cCGAUGACuuCACGGgcgUGugGGCCGCGGc -3'
miRNA:   3'- -GUUGCUGccGUGCC---ACugCCGGCGCC- -5'
11606 5' -59.3 NC_003085.1 + 22782 0.76 0.113742
Target:  5'- uGGCGACGGCAgCGGcaACGGCCGCu- -3'
miRNA:   3'- gUUGCUGCCGU-GCCacUGCCGGCGcc -5'
11606 5' -59.3 NC_003085.1 + 22946 0.67 0.446298
Target:  5'- --uCGACGGCGCGGcgaagccgGACGaGCCGg-- -3'
miRNA:   3'- guuGCUGCCGUGCCa-------CUGC-CGGCgcc -5'
11606 5' -59.3 NC_003085.1 + 24060 0.66 0.514979
Target:  5'- uGGCGAa-GCGCGG-GAa-GCCGCGGc -3'
miRNA:   3'- gUUGCUgcCGUGCCaCUgcCGGCGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.