miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11606 5' -59.3 NC_003085.1 + 286 0.69 0.36608
Target:  5'- gCAGCGGCGGCA-GGaccgGGCGGCCucCGa -3'
miRNA:   3'- -GUUGCUGCCGUgCCa---CUGCCGGc-GCc -5'
11606 5' -59.3 NC_003085.1 + 482 0.69 0.325245
Target:  5'- -cACGACGGCcaucagcGCGGagaUGAaGGCgCGCGGg -3'
miRNA:   3'- guUGCUGCCG-------UGCC---ACUgCCG-GCGCC- -5'
11606 5' -59.3 NC_003085.1 + 557 0.71 0.262317
Target:  5'- aCGGCGcgagGCGGCGCGGcUGGCGGgCCaaugcuccguguGCGGc -3'
miRNA:   3'- -GUUGC----UGCCGUGCC-ACUGCC-GG------------CGCC- -5'
11606 5' -59.3 NC_003085.1 + 1500 0.67 0.475142
Target:  5'- cCAGCcuCGGC-CGGUGcgccucACGGCCGCc- -3'
miRNA:   3'- -GUUGcuGCCGuGCCAC------UGCCGGCGcc -5'
11606 5' -59.3 NC_003085.1 + 1906 0.67 0.446298
Target:  5'- --cCGGCGGCugGGUuguuGCGGaagaCGUGGu -3'
miRNA:   3'- guuGCUGCCGugCCAc---UGCCg---GCGCC- -5'
11606 5' -59.3 NC_003085.1 + 2348 0.69 0.34164
Target:  5'- -uGCGACauccgggaGGCGCaGUGcgaGGCCGCGGc -3'
miRNA:   3'- guUGCUG--------CCGUGcCACug-CCGGCGCC- -5'
11606 5' -59.3 NC_003085.1 + 2784 0.74 0.161181
Target:  5'- gCAGCGGCGGCGCuccaGGCGGCgGCGa -3'
miRNA:   3'- -GUUGCUGCCGUGcca-CUGCCGgCGCc -5'
11606 5' -59.3 NC_003085.1 + 3679 0.73 0.188126
Target:  5'- gCAGgGACGGCGCGGcgaguccUGACG-CCGCGu -3'
miRNA:   3'- -GUUgCUGCCGUGCC-------ACUGCcGGCGCc -5'
11606 5' -59.3 NC_003085.1 + 3859 0.66 0.49887
Target:  5'- gGACcACGGCGCGucGACGGCgcgcccgccgucuguCGCGGu -3'
miRNA:   3'- gUUGcUGCCGUGCcaCUGCCG---------------GCGCC- -5'
11606 5' -59.3 NC_003085.1 + 3945 0.68 0.409415
Target:  5'- gCGGCGauguugucGCGGCcCGGggauggagccaGACGGCCGCGc -3'
miRNA:   3'- -GUUGC--------UGCCGuGCCa----------CUGCCGGCGCc -5'
11606 5' -59.3 NC_003085.1 + 4477 0.79 0.069283
Target:  5'- aCGACGAgGGCACGGUGACGaaGCgCGCuGGc -3'
miRNA:   3'- -GUUGCUgCCGUGCCACUGC--CG-GCG-CC- -5'
11606 5' -59.3 NC_003085.1 + 5166 0.7 0.296369
Target:  5'- gCAGCGGCcauccuGGCGCGGaaggcagGGCGGCgcCGUGGg -3'
miRNA:   3'- -GUUGCUG------CCGUGCCa------CUGCCG--GCGCC- -5'
11606 5' -59.3 NC_003085.1 + 5490 0.67 0.455806
Target:  5'- aCAACG-CGGCGUGG-GGCcgGGCCGUGa -3'
miRNA:   3'- -GUUGCuGCCGUGCCaCUG--CCGGCGCc -5'
11606 5' -59.3 NC_003085.1 + 5537 0.66 0.494878
Target:  5'- aCAACGGCGGCGgccaucCGGuUGGCGGacaUGCu- -3'
miRNA:   3'- -GUUGCUGCCGU------GCC-ACUGCCg--GCGcc -5'
11606 5' -59.3 NC_003085.1 + 7317 0.71 0.268864
Target:  5'- --cCGACGGCcaucGCGGaGGCGGCugaggaCGCGGg -3'
miRNA:   3'- guuGCUGCCG----UGCCaCUGCCG------GCGCC- -5'
11606 5' -59.3 NC_003085.1 + 7520 0.66 0.514979
Target:  5'- uCggUGGCGGCAagUGG-GGCcauGCCGUGGg -3'
miRNA:   3'- -GuuGCUGCCGU--GCCaCUGc--CGGCGCC- -5'
11606 5' -59.3 NC_003085.1 + 7528 0.66 0.535403
Target:  5'- cCGACGAgGacGCGCGGgccgaggggugUGACGucgaccuuGCCGCGGc -3'
miRNA:   3'- -GUUGCUgC--CGUGCC-----------ACUGC--------CGGCGCC- -5'
11606 5' -59.3 NC_003085.1 + 8449 0.69 0.349654
Target:  5'- cCAGCGACGccCACGGcgaUGACGacGCCGCuGGg -3'
miRNA:   3'- -GUUGCUGCc-GUGCC---ACUGC--CGGCG-CC- -5'
11606 5' -59.3 NC_003085.1 + 8837 0.66 0.494878
Target:  5'- gGGCGACGaGgACGGcaGCGGCCGUc- -3'
miRNA:   3'- gUUGCUGC-CgUGCCacUGCCGGCGcc -5'
11606 5' -59.3 NC_003085.1 + 9494 0.67 0.446298
Target:  5'- -uACGucGCGGUgACGaUGGCGGCgCGCGGc -3'
miRNA:   3'- guUGC--UGCCG-UGCcACUGCCG-GCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.