miRNA display CGI


Results 1 - 20 of 92 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11606 5' -59.3 NC_003085.1 + 48741 0.72 0.230932
Target:  5'- aGGCGACugaGGCGCGGgugGACcugcucaGGCCGCGc -3'
miRNA:   3'- gUUGCUG---CCGUGCCa--CUG-------CCGGCGCc -5'
11606 5' -59.3 NC_003085.1 + 48654 0.7 0.318401
Target:  5'- -uGCGGCGGCACGcG-GACGuccaCCGUGGc -3'
miRNA:   3'- guUGCUGCCGUGC-CaCUGCc---GGCGCC- -5'
11606 5' -59.3 NC_003085.1 + 47980 0.68 0.409415
Target:  5'- ---aGGCuGGCgACGGUGACGGgCgGCGa -3'
miRNA:   3'- guugCUG-CCG-UGCCACUGCC-GgCGCc -5'
11606 5' -59.3 NC_003085.1 + 47501 0.68 0.409415
Target:  5'- -cGCGGCGGaaccuguCGGUGGCGaaGCCGCu- -3'
miRNA:   3'- guUGCUGCCgu-----GCCACUGC--CGGCGcc -5'
11606 5' -59.3 NC_003085.1 + 47365 0.71 0.268864
Target:  5'- --cCGAUGGCGCcgaGGUGcgGCGGCUGCGc -3'
miRNA:   3'- guuGCUGCCGUG---CCAC--UGCCGGCGCc -5'
11606 5' -59.3 NC_003085.1 + 47146 0.74 0.169902
Target:  5'- aAGCGGCGGC-CGGUGGCGaggcaggccagcGCCGUGc -3'
miRNA:   3'- gUUGCUGCCGuGCCACUGC------------CGGCGCc -5'
11606 5' -59.3 NC_003085.1 + 46920 0.67 0.446298
Target:  5'- gCGGCaGGCGGCACaGGUu-CGGCgCGCGc -3'
miRNA:   3'- -GUUG-CUGCCGUG-CCAcuGCCG-GCGCc -5'
11606 5' -59.3 NC_003085.1 + 46389 0.66 0.484962
Target:  5'- gAGCGGuuUGGCAgGG-GAuucCGGCgGCGGg -3'
miRNA:   3'- gUUGCU--GCCGUgCCaCU---GCCGgCGCC- -5'
11606 5' -59.3 NC_003085.1 + 45595 0.73 0.193569
Target:  5'- aGACGGCgGGCGCGccGUcGACGcGCCGUGGu -3'
miRNA:   3'- gUUGCUG-CCGUGC--CA-CUGC-CGGCGCC- -5'
11606 5' -59.3 NC_003085.1 + 45415 0.67 0.465421
Target:  5'- uCAGCGAaagcauggGGCGCGGUGGCGucGUCaCGGc -3'
miRNA:   3'- -GUUGCUg-------CCGUGCCACUGC--CGGcGCC- -5'
11606 5' -59.3 NC_003085.1 + 45024 0.68 0.409415
Target:  5'- --cCGACGGCgACGGUGAgGagcaCCGuCGGg -3'
miRNA:   3'- guuGCUGCCG-UGCCACUgCc---GGC-GCC- -5'
11606 5' -59.3 NC_003085.1 + 44339 0.67 0.465421
Target:  5'- gGGCGGCGaCGCGGgagagGGCGGCCaaucccGCGu -3'
miRNA:   3'- gUUGCUGCcGUGCCa----CUGCCGG------CGCc -5'
11606 5' -59.3 NC_003085.1 + 43762 0.67 0.436902
Target:  5'- gGugGugGGCGCGGgcuugGAcucaacacCGGCCaGCGu -3'
miRNA:   3'- gUugCugCCGUGCCa----CU--------GCCGG-CGCc -5'
11606 5' -59.3 NC_003085.1 + 42748 0.76 0.116872
Target:  5'- uCAuCGGCGGCAUGGgugcggugcagGGCGGCCGCa- -3'
miRNA:   3'- -GUuGCUGCCGUGCCa----------CUGCCGGCGcc -5'
11606 5' -59.3 NC_003085.1 + 42728 0.72 0.243454
Target:  5'- aGGCGugGGCGuCGGggcgauGCGGgCGCGGu -3'
miRNA:   3'- gUUGCugCCGU-GCCac----UGCCgGCGCC- -5'
11606 5' -59.3 NC_003085.1 + 42455 0.67 0.456763
Target:  5'- --uUGAgGGCGcCGGUGAUGGCagugaggaguccgaaGCGGc -3'
miRNA:   3'- guuGCUgCCGU-GCCACUGCCGg--------------CGCC- -5'
11606 5' -59.3 NC_003085.1 + 41701 0.67 0.479058
Target:  5'- gCGACGAUGGCugAugacacggccguccuCGGUGACGGaguacCCGgGGa -3'
miRNA:   3'- -GUUGCUGCCG--U---------------GCCACUGCC-----GGCgCC- -5'
11606 5' -59.3 NC_003085.1 + 41385 0.75 0.152866
Target:  5'- -cAUGACGGUggugGGUGACGGCCGUGu -3'
miRNA:   3'- guUGCUGCCGug--CCACUGCCGGCGCc -5'
11606 5' -59.3 NC_003085.1 + 41221 0.67 0.446298
Target:  5'- -uGCucUGGCACGGUGACGuGCgGCc- -3'
miRNA:   3'- guUGcuGCCGUGCCACUGC-CGgCGcc -5'
11606 5' -59.3 NC_003085.1 + 40888 0.73 0.193569
Target:  5'- aCGACGGCGGCaugccACGGUuguugcGGCGGgaGCGGg -3'
miRNA:   3'- -GUUGCUGCCG-----UGCCA------CUGCCggCGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.