miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11606 5' -59.3 NC_003085.1 + 40553 1.09 0.00042
Target:  5'- aCAACGACGGCACGGUGACGGCCGCGGu -3'
miRNA:   3'- -GUUGCUGCCGUGCCACUGCCGGCGCC- -5'
11606 5' -59.3 NC_003085.1 + 4477 0.79 0.069283
Target:  5'- aCGACGAgGGCACGGUGACGaaGCgCGCuGGc -3'
miRNA:   3'- -GUUGCUgCCGUGCCACUGC--CG-GCG-CC- -5'
11606 5' -59.3 NC_003085.1 + 24354 0.79 0.07743
Target:  5'- aCGGCGACGGgACGGccuuUGGCGGCCG-GGc -3'
miRNA:   3'- -GUUGCUGCCgUGCC----ACUGCCGGCgCC- -5'
11606 5' -59.3 NC_003085.1 + 12292 0.79 0.079605
Target:  5'- -cGCGACGGCGCGGUGGuccgcugGGuuGCGGc -3'
miRNA:   3'- guUGCUGCCGUGCCACUg------CCggCGCC- -5'
11606 5' -59.3 NC_003085.1 + 34191 0.77 0.10199
Target:  5'- gGGCG-CGGCG-GGUGAgcuCGGCCGCGGc -3'
miRNA:   3'- gUUGCuGCCGUgCCACU---GCCGGCGCC- -5'
11606 5' -59.3 NC_003085.1 + 22782 0.76 0.113742
Target:  5'- uGGCGACGGCAgCGGcaACGGCCGCu- -3'
miRNA:   3'- gUUGCUGCCGU-GCCacUGCCGGCGcc -5'
11606 5' -59.3 NC_003085.1 + 42748 0.76 0.116872
Target:  5'- uCAuCGGCGGCAUGGgugcggugcagGGCGGCCGCa- -3'
miRNA:   3'- -GUuGCUGCCGUGCCa----------CUGCCGGCGcc -5'
11606 5' -59.3 NC_003085.1 + 26221 0.76 0.123374
Target:  5'- ---gGGCGGCGCGGUGcgaagcgcgGCGGCCGUcuGGa -3'
miRNA:   3'- guugCUGCCGUGCCAC---------UGCCGGCG--CC- -5'
11606 5' -59.3 NC_003085.1 + 22570 0.75 0.144942
Target:  5'- cCGAUGACuuCACGGgcgUGugGGCCGCGGc -3'
miRNA:   3'- -GUUGCUGccGUGCC---ACugCCGGCGCC- -5'
11606 5' -59.3 NC_003085.1 + 41385 0.75 0.152866
Target:  5'- -cAUGACGGUggugGGUGACGGCCGUGu -3'
miRNA:   3'- guUGCUGCCGug--CCACUGCCGGCGCc -5'
11606 5' -59.3 NC_003085.1 + 11769 0.74 0.156974
Target:  5'- -uACGACGGUACGGcGGCG-CCGCGc -3'
miRNA:   3'- guUGCUGCCGUGCCaCUGCcGGCGCc -5'
11606 5' -59.3 NC_003085.1 + 2784 0.74 0.161181
Target:  5'- gCAGCGGCGGCGCuccaGGCGGCgGCGa -3'
miRNA:   3'- -GUUGCUGCCGUGcca-CUGCCGgCGCc -5'
11606 5' -59.3 NC_003085.1 + 47146 0.74 0.169902
Target:  5'- aAGCGGCGGC-CGGUGGCGaggcaggccagcGCCGUGc -3'
miRNA:   3'- gUUGCUGCCGuGCCACUGC------------CGGCGCc -5'
11606 5' -59.3 NC_003085.1 + 22480 0.74 0.174418
Target:  5'- aCAugGAgGGCACGGUGGCGaCgGaCGGc -3'
miRNA:   3'- -GUugCUgCCGUGCCACUGCcGgC-GCC- -5'
11606 5' -59.3 NC_003085.1 + 25735 0.74 0.174418
Target:  5'- --uCGGCGcCACGGUGGgGGCCGgGGc -3'
miRNA:   3'- guuGCUGCcGUGCCACUgCCGGCgCC- -5'
11606 5' -59.3 NC_003085.1 + 32028 0.73 0.183773
Target:  5'- -uGCGuacCGGCGCGGUGAUGGggGCGGc -3'
miRNA:   3'- guUGCu--GCCGUGCCACUGCCggCGCC- -5'
11606 5' -59.3 NC_003085.1 + 3679 0.73 0.188126
Target:  5'- gCAGgGACGGCGCGGcgaguccUGACG-CCGCGu -3'
miRNA:   3'- -GUUgCUGCCGUGCC-------ACUGCcGGCGCc -5'
11606 5' -59.3 NC_003085.1 + 24706 0.73 0.188615
Target:  5'- gGACGGCGGCAUc--GGCGGCuuCGCGGg -3'
miRNA:   3'- gUUGCUGCCGUGccaCUGCCG--GCGCC- -5'
11606 5' -59.3 NC_003085.1 + 40888 0.73 0.193569
Target:  5'- aCGACGGCGGCaugccACGGUuguugcGGCGGgaGCGGg -3'
miRNA:   3'- -GUUGCUGCCG-----UGCCA------CUGCCggCGCC- -5'
11606 5' -59.3 NC_003085.1 + 45595 0.73 0.193569
Target:  5'- aGACGGCgGGCGCGccGUcGACGcGCCGUGGu -3'
miRNA:   3'- gUUGCUG-CCGUGC--CA-CUGC-CGGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.