miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11606 5' -59.3 NC_003085.1 + 34721 0.7 0.303579
Target:  5'- -cACGGCGGCGCGuGgcauaccGAUGGCaucgCGCGGa -3'
miRNA:   3'- guUGCUGCCGUGC-Ca------CUGCCG----GCGCC- -5'
11606 5' -59.3 NC_003085.1 + 25447 0.72 0.213989
Target:  5'- gAGCGGCGGccgguuuCugGGUGGuCGGCCGCc- -3'
miRNA:   3'- gUUGCUGCC-------GugCCACU-GCCGGCGcc -5'
11606 5' -59.3 NC_003085.1 + 37143 0.72 0.2321
Target:  5'- aCGGCGACGGCgggcacccugGCGGUGACGGggacgagcuccuucaCGgGGa -3'
miRNA:   3'- -GUUGCUGCCG----------UGCCACUGCCg--------------GCgCC- -5'
11606 5' -59.3 NC_003085.1 + 42728 0.72 0.243454
Target:  5'- aGGCGugGGCGuCGGggcgauGCGGgCGCGGu -3'
miRNA:   3'- gUUGCugCCGU-GCCac----UGCCgGCGCC- -5'
11606 5' -59.3 NC_003085.1 + 26711 0.71 0.249613
Target:  5'- gAGCG-CGcGCaggGCGGUGACGGC-GCGGc -3'
miRNA:   3'- gUUGCuGC-CG---UGCCACUGCCGgCGCC- -5'
11606 5' -59.3 NC_003085.1 + 7317 0.71 0.268864
Target:  5'- --cCGACGGCcaucGCGGaGGCGGCugaggaCGCGGg -3'
miRNA:   3'- guuGCUGCCG----UGCCaCUGCCG------GCGCC- -5'
11606 5' -59.3 NC_003085.1 + 25297 0.71 0.268864
Target:  5'- -cGCGACGGC-CGGccaggugGACGacGCCGUGGu -3'
miRNA:   3'- guUGCUGCCGuGCCa------CUGC--CGGCGCC- -5'
11606 5' -59.3 NC_003085.1 + 15928 0.71 0.27825
Target:  5'- gCGugGACGGCGugugacaggcucggcUGGUGGCgcucccuuGGCCGCuGGg -3'
miRNA:   3'- -GUugCUGCCGU---------------GCCACUG--------CCGGCG-CC- -5'
11606 5' -59.3 NC_003085.1 + 5166 0.7 0.296369
Target:  5'- gCAGCGGCcauccuGGCGCGGaaggcagGGCGGCgcCGUGGg -3'
miRNA:   3'- -GUUGCUG------CCGUGCCa------CUGCCG--GCGCC- -5'
11606 5' -59.3 NC_003085.1 + 18339 0.73 0.209118
Target:  5'- gCAACGcgcugccuuACGGgGCGGUG-CaGGCCGUGGa -3'
miRNA:   3'- -GUUGC---------UGCCgUGCCACuG-CCGGCGCC- -5'
11606 5' -59.3 NC_003085.1 + 25164 0.73 0.198636
Target:  5'- cCGGCGACcguGGCcUGGUGGCGGUgGCGa -3'
miRNA:   3'- -GUUGCUG---CCGuGCCACUGCCGgCGCc -5'
11606 5' -59.3 NC_003085.1 + 24706 0.73 0.188615
Target:  5'- gGACGGCGGCAUc--GGCGGCuuCGCGGg -3'
miRNA:   3'- gUUGCUGCCGUGccaCUGCCG--GCGCC- -5'
11606 5' -59.3 NC_003085.1 + 24354 0.79 0.07743
Target:  5'- aCGGCGACGGgACGGccuuUGGCGGCCG-GGc -3'
miRNA:   3'- -GUUGCUGCCgUGCC----ACUGCCGGCgCC- -5'
11606 5' -59.3 NC_003085.1 + 12292 0.79 0.079605
Target:  5'- -cGCGACGGCGCGGUGGuccgcugGGuuGCGGc -3'
miRNA:   3'- guUGCUGCCGUGCCACUg------CCggCGCC- -5'
11606 5' -59.3 NC_003085.1 + 22782 0.76 0.113742
Target:  5'- uGGCGACGGCAgCGGcaACGGCCGCu- -3'
miRNA:   3'- gUUGCUGCCGU-GCCacUGCCGGCGcc -5'
11606 5' -59.3 NC_003085.1 + 22570 0.75 0.144942
Target:  5'- cCGAUGACuuCACGGgcgUGugGGCCGCGGc -3'
miRNA:   3'- -GUUGCUGccGUGCC---ACugCCGGCGCC- -5'
11606 5' -59.3 NC_003085.1 + 41385 0.75 0.152866
Target:  5'- -cAUGACGGUggugGGUGACGGCCGUGu -3'
miRNA:   3'- guUGCUGCCGug--CCACUGCCGGCGCc -5'
11606 5' -59.3 NC_003085.1 + 11769 0.74 0.156974
Target:  5'- -uACGACGGUACGGcGGCG-CCGCGc -3'
miRNA:   3'- guUGCUGCCGUGCCaCUGCcGGCGCc -5'
11606 5' -59.3 NC_003085.1 + 22480 0.74 0.174418
Target:  5'- aCAugGAgGGCACGGUGGCGaCgGaCGGc -3'
miRNA:   3'- -GUugCUgCCGUGCCACUGCcGgC-GCC- -5'
11606 5' -59.3 NC_003085.1 + 32028 0.73 0.183773
Target:  5'- -uGCGuacCGGCGCGGUGAUGGggGCGGc -3'
miRNA:   3'- guUGCu--GCCGUGCCACUGCCggCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.