miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11606 5' -59.3 NC_003085.1 + 36914 0.66 0.535403
Target:  5'- cCGGCcaGCGGCGCgGGUGGCaucccucuGCCGCGa -3'
miRNA:   3'- -GUUGc-UGCCGUG-CCACUGc-------CGGCGCc -5'
11606 5' -59.3 NC_003085.1 + 45024 0.68 0.409415
Target:  5'- --cCGACGGCgACGGUGAgGagcaCCGuCGGg -3'
miRNA:   3'- guuGCUGCCG-UGCCACUgCc---GGC-GCC- -5'
11606 5' -59.3 NC_003085.1 + 19326 0.68 0.391699
Target:  5'- gCGugGGCuGCugGG-GcCGGCgGCGGa -3'
miRNA:   3'- -GUugCUGcCGugCCaCuGCCGgCGCC- -5'
11606 5' -59.3 NC_003085.1 + 4477 0.79 0.069283
Target:  5'- aCGACGAgGGCACGGUGACGaaGCgCGCuGGc -3'
miRNA:   3'- -GUUGCUgCCGUGCCACUGC--CG-GCG-CC- -5'
11606 5' -59.3 NC_003085.1 + 5537 0.66 0.494878
Target:  5'- aCAACGGCGGCGgccaucCGGuUGGCGGacaUGCu- -3'
miRNA:   3'- -GUUGCUGCCGU------GCC-ACUGCCg--GCGcc -5'
11606 5' -59.3 NC_003085.1 + 46389 0.66 0.484962
Target:  5'- gAGCGGuuUGGCAgGG-GAuucCGGCgGCGGg -3'
miRNA:   3'- gUUGCU--GCCGUgCCaCU---GCCGgCGCC- -5'
11606 5' -59.3 NC_003085.1 + 11342 0.67 0.475142
Target:  5'- gCGGCGAgccucaCGGCACcuccgagacgauGGUGGCGGCgC-CGGa -3'
miRNA:   3'- -GUUGCU------GCCGUG------------CCACUGCCG-GcGCC- -5'
11606 5' -59.3 NC_003085.1 + 45415 0.67 0.465421
Target:  5'- uCAGCGAaagcauggGGCGCGGUGGCGucGUCaCGGc -3'
miRNA:   3'- -GUUGCUg-------CCGUGCCACUGC--CGGcGCC- -5'
11606 5' -59.3 NC_003085.1 + 5490 0.67 0.455806
Target:  5'- aCAACG-CGGCGUGG-GGCcgGGCCGUGa -3'
miRNA:   3'- -GUUGCuGCCGUGCCaCUG--CCGGCGCc -5'
11606 5' -59.3 NC_003085.1 + 47501 0.68 0.409415
Target:  5'- -cGCGGCGGaaccuguCGGUGGCGaaGCCGCu- -3'
miRNA:   3'- guUGCUGCCgu-----GCCACUGC--CGGCGcc -5'
11606 5' -59.3 NC_003085.1 + 16936 0.67 0.446298
Target:  5'- -cGCGACGGUGCGGU-ACucCUGCGGa -3'
miRNA:   3'- guUGCUGCCGUGCCAcUGccGGCGCC- -5'
11606 5' -59.3 NC_003085.1 + 42455 0.67 0.456763
Target:  5'- --uUGAgGGCGcCGGUGAUGGCagugaggaguccgaaGCGGc -3'
miRNA:   3'- guuGCUgCCGU-GCCACUGCCGg--------------CGCC- -5'
11606 5' -59.3 NC_003085.1 + 15622 0.66 0.525153
Target:  5'- -uACGugGGC-CGGUGGcCGG--GCGGa -3'
miRNA:   3'- guUGCugCCGuGCCACU-GCCggCGCC- -5'
11606 5' -59.3 NC_003085.1 + 9494 0.67 0.446298
Target:  5'- -uACGucGCGGUgACGaUGGCGGCgCGCGGc -3'
miRNA:   3'- guUGC--UGCCG-UGCcACUGCCG-GCGCC- -5'
11606 5' -59.3 NC_003085.1 + 7520 0.66 0.514979
Target:  5'- uCggUGGCGGCAagUGG-GGCcauGCCGUGGg -3'
miRNA:   3'- -GuuGCUGCCGU--GCCaCUGc--CGGCGCC- -5'
11606 5' -59.3 NC_003085.1 + 16735 0.67 0.465421
Target:  5'- -uGCGAUGGCAuccuCGGUGugGcgacgcacuguuGCCGCa- -3'
miRNA:   3'- guUGCUGCCGU----GCCACugC------------CGGCGcc -5'
11606 5' -59.3 NC_003085.1 + 39874 0.67 0.427621
Target:  5'- gGAUGGCGGagagacgcCGGUGcuCGGCgGCGGc -3'
miRNA:   3'- gUUGCUGCCgu------GCCACu-GCCGgCGCC- -5'
11606 5' -59.3 NC_003085.1 + 47980 0.68 0.409415
Target:  5'- ---aGGCuGGCgACGGUGACGGgCgGCGa -3'
miRNA:   3'- guugCUG-CCG-UGCCACUGCC-GgCGCc -5'
11606 5' -59.3 NC_003085.1 + 8837 0.66 0.494878
Target:  5'- gGGCGACGaGgACGGcaGCGGCCGUc- -3'
miRNA:   3'- gUUGCUGC-CgUGCCacUGCCGGCGcc -5'
11606 5' -59.3 NC_003085.1 + 41701 0.67 0.479058
Target:  5'- gCGACGAUGGCugAugacacggccguccuCGGUGACGGaguacCCGgGGa -3'
miRNA:   3'- -GUUGCUGCCG--U---------------GCCACUGCC-----GGCgCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.