miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11606 5' -59.3 NC_003085.1 + 31777 0.66 0.494878
Target:  5'- gUAGCGuGCGGUugGGcGaaGCGGCC-CGGc -3'
miRNA:   3'- -GUUGC-UGCCGugCCaC--UGCCGGcGCC- -5'
11606 5' -59.3 NC_003085.1 + 37506 0.66 0.495874
Target:  5'- --uCGugGGCcaccaucaacaccacCGGUGGCGGCUcgucaGCGGu -3'
miRNA:   3'- guuGCugCCGu--------------GCCACUGCCGG-----CGCC- -5'
11606 5' -59.3 NC_003085.1 + 27517 0.66 0.493882
Target:  5'- gCGGCGcCGGCAUGGaUGACucccucguGGCCaucuccgGCGGc -3'
miRNA:   3'- -GUUGCuGCCGUGCC-ACUG--------CCGG-------CGCC- -5'
11606 5' -59.3 NC_003085.1 + 5537 0.66 0.494878
Target:  5'- aCAACGGCGGCGgccaucCGGuUGGCGGacaUGCu- -3'
miRNA:   3'- -GUUGCUGCCGU------GCC-ACUGCCg--GCGcc -5'
11606 5' -59.3 NC_003085.1 + 46389 0.66 0.484962
Target:  5'- gAGCGGuuUGGCAgGG-GAuucCGGCgGCGGg -3'
miRNA:   3'- gUUGCU--GCCGUgCCaCU---GCCGgCGCC- -5'
11606 5' -59.3 NC_003085.1 + 3859 0.66 0.49887
Target:  5'- gGACcACGGCGCGucGACGGCgcgcccgccgucuguCGCGGu -3'
miRNA:   3'- gUUGcUGCCGUGCcaCUGCCG---------------GCGCC- -5'
11606 5' -59.3 NC_003085.1 + 8837 0.66 0.494878
Target:  5'- gGGCGACGaGgACGGcaGCGGCCGUc- -3'
miRNA:   3'- gUUGCUGC-CgUGCCacUGCCGGCGcc -5'
11606 5' -59.3 NC_003085.1 + 15622 0.66 0.525153
Target:  5'- -uACGugGGC-CGGUGGcCGG--GCGGa -3'
miRNA:   3'- guUGCugCCGuGCCACU-GCCggCGCC- -5'
11606 5' -59.3 NC_003085.1 + 36914 0.66 0.535403
Target:  5'- cCGGCcaGCGGCGCgGGUGGCaucccucuGCCGCGa -3'
miRNA:   3'- -GUUGc-UGCCGUG-CCACUGc-------CGGCGCc -5'
11606 5' -59.3 NC_003085.1 + 7528 0.66 0.535403
Target:  5'- cCGACGAgGacGCGCGGgccgaggggugUGACGucgaccuuGCCGCGGc -3'
miRNA:   3'- -GUUGCUgC--CGUGCC-----------ACUGC--------CGGCGCC- -5'
11606 5' -59.3 NC_003085.1 + 28309 0.66 0.504885
Target:  5'- gCAGC-AgGuGCGCGGUggGACGGgCGUGGg -3'
miRNA:   3'- -GUUGcUgC-CGUGCCA--CUGCCgGCGCC- -5'
11606 5' -59.3 NC_003085.1 + 11513 0.66 0.525153
Target:  5'- -uGCGGgugUGGUGCGGUuacCGGCCGCGc -3'
miRNA:   3'- guUGCU---GCCGUGCCAcu-GCCGGCGCc -5'
11606 5' -59.3 NC_003085.1 + 24060 0.66 0.514979
Target:  5'- uGGCGAa-GCGCGG-GAa-GCCGCGGc -3'
miRNA:   3'- gUUGCUgcCGUGCCaCUgcCGGCGCC- -5'
11606 5' -59.3 NC_003085.1 + 7520 0.66 0.514979
Target:  5'- uCggUGGCGGCAagUGG-GGCcauGCCGUGGg -3'
miRNA:   3'- -GuuGCUGCCGU--GCCaCUGc--CGGCGCC- -5'
11606 5' -59.3 NC_003085.1 + 28210 0.67 0.42486
Target:  5'- -cGCGGaguUGGCGCcagugucggccaugGGUGGCGGCaGCGGu -3'
miRNA:   3'- guUGCU---GCCGUG--------------CCACUGCCGgCGCC- -5'
11606 5' -59.3 NC_003085.1 + 41221 0.67 0.446298
Target:  5'- -uGCucUGGCACGGUGACGuGCgGCc- -3'
miRNA:   3'- guUGcuGCCGUGCCACUGC-CGgCGcc -5'
11606 5' -59.3 NC_003085.1 + 22946 0.67 0.446298
Target:  5'- --uCGACGGCGCGGcgaagccgGACGaGCCGg-- -3'
miRNA:   3'- guuGCUGCCGUGCCa-------CUGC-CGGCgcc -5'
11606 5' -59.3 NC_003085.1 + 46920 0.67 0.446298
Target:  5'- gCGGCaGGCGGCACaGGUu-CGGCgCGCGc -3'
miRNA:   3'- -GUUG-CUGCCGUG-CCAcuGCCG-GCGCc -5'
11606 5' -59.3 NC_003085.1 + 1906 0.67 0.446298
Target:  5'- --cCGGCGGCugGGUuguuGCGGaagaCGUGGu -3'
miRNA:   3'- guuGCUGCCGugCCAc---UGCCg---GCGCC- -5'
11606 5' -59.3 NC_003085.1 + 43762 0.67 0.436902
Target:  5'- gGugGugGGCGCGGgcuugGAcucaacacCGGCCaGCGu -3'
miRNA:   3'- gUugCugCCGUGCCa----CU--------GCCGG-CGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.