Results 21 - 40 of 92 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11606 | 5' | -59.3 | NC_003085.1 | + | 24528 | 0.67 | 0.475142 |
Target: 5'- uGACGAaguugUGGuCGCGGUGcgugcGCGGC-GCGGa -3' miRNA: 3'- gUUGCU-----GCC-GUGCCAC-----UGCCGgCGCC- -5' |
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11606 | 5' | -59.3 | NC_003085.1 | + | 1500 | 0.67 | 0.475142 |
Target: 5'- cCAGCcuCGGC-CGGUGcgccucACGGCCGCc- -3' miRNA: 3'- -GUUGcuGCCGuGCCAC------UGCCGGCGcc -5' |
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11606 | 5' | -59.3 | NC_003085.1 | + | 28017 | 0.67 | 0.435969 |
Target: 5'- uCAACGACGGCuACGuG-GACGGCguccuccUGuCGGa -3' miRNA: 3'- -GUUGCUGCCG-UGC-CaCUGCCG-------GC-GCC- -5' |
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11606 | 5' | -59.3 | NC_003085.1 | + | 28210 | 0.67 | 0.42486 |
Target: 5'- -cGCGGaguUGGCGCcagugucggccaugGGUGGCGGCaGCGGu -3' miRNA: 3'- guUGCU---GCCGUG--------------CCACUGCCGgCGCC- -5' |
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11606 | 5' | -59.3 | NC_003085.1 | + | 41701 | 0.67 | 0.479058 |
Target: 5'- gCGACGAUGGCugAugacacggccguccuCGGUGACGGaguacCCGgGGa -3' miRNA: 3'- -GUUGCUGCCG--U---------------GCCACUGCC-----GGCgCC- -5' |
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11606 | 5' | -59.3 | NC_003085.1 | + | 11342 | 0.67 | 0.475142 |
Target: 5'- gCGGCGAgccucaCGGCACcuccgagacgauGGUGGCGGCgC-CGGa -3' miRNA: 3'- -GUUGCU------GCCGUG------------CCACUGCCG-GcGCC- -5' |
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11606 | 5' | -59.3 | NC_003085.1 | + | 45415 | 0.67 | 0.465421 |
Target: 5'- uCAGCGAaagcauggGGCGCGGUGGCGucGUCaCGGc -3' miRNA: 3'- -GUUGCUg-------CCGUGCCACUGC--CGGcGCC- -5' |
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11606 | 5' | -59.3 | NC_003085.1 | + | 16735 | 0.67 | 0.465421 |
Target: 5'- -uGCGAUGGCAuccuCGGUGugGcgacgcacuguuGCCGCa- -3' miRNA: 3'- guUGCUGCCGU----GCCACugC------------CGGCGcc -5' |
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11606 | 5' | -59.3 | NC_003085.1 | + | 42455 | 0.67 | 0.456763 |
Target: 5'- --uUGAgGGCGcCGGUGAUGGCagugaggaguccgaaGCGGc -3' miRNA: 3'- guuGCUgCCGU-GCCACUGCCGg--------------CGCC- -5' |
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11606 | 5' | -59.3 | NC_003085.1 | + | 5490 | 0.67 | 0.455806 |
Target: 5'- aCAACG-CGGCGUGG-GGCcgGGCCGUGa -3' miRNA: 3'- -GUUGCuGCCGUGCCaCUG--CCGGCGCc -5' |
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11606 | 5' | -59.3 | NC_003085.1 | + | 31659 | 0.67 | 0.455806 |
Target: 5'- ---aGGCGGCAcCGG-GGCGGgCgGUGGa -3' miRNA: 3'- guugCUGCCGU-GCCaCUGCC-GgCGCC- -5' |
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11606 | 5' | -59.3 | NC_003085.1 | + | 16936 | 0.67 | 0.446298 |
Target: 5'- -cGCGACGGUGCGGU-ACucCUGCGGa -3' miRNA: 3'- guUGCUGCCGUGCCAcUGccGGCGCC- -5' |
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11606 | 5' | -59.3 | NC_003085.1 | + | 9494 | 0.67 | 0.446298 |
Target: 5'- -uACGucGCGGUgACGaUGGCGGCgCGCGGc -3' miRNA: 3'- guUGC--UGCCG-UGCcACUGCCG-GCGCC- -5' |
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11606 | 5' | -59.3 | NC_003085.1 | + | 39874 | 0.67 | 0.427621 |
Target: 5'- gGAUGGCGGagagacgcCGGUGcuCGGCgGCGGc -3' miRNA: 3'- gUUGCUGCCgu------GCCACu-GCCGgCGCC- -5' |
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11606 | 5' | -59.3 | NC_003085.1 | + | 47501 | 0.68 | 0.409415 |
Target: 5'- -cGCGGCGGaaccuguCGGUGGCGaaGCCGCu- -3' miRNA: 3'- guUGCUGCCgu-----GCCACUGC--CGGCGcc -5' |
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11606 | 5' | -59.3 | NC_003085.1 | + | 45024 | 0.68 | 0.409415 |
Target: 5'- --cCGACGGCgACGGUGAgGagcaCCGuCGGg -3' miRNA: 3'- guuGCUGCCG-UGCCACUgCc---GGC-GCC- -5' |
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11606 | 5' | -59.3 | NC_003085.1 | + | 37069 | 0.68 | 0.418458 |
Target: 5'- cCGACGACGuGCGgaugcaGGUgGACGGCgCGCa- -3' miRNA: 3'- -GUUGCUGC-CGUg-----CCA-CUGCCG-GCGcc -5' |
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11606 | 5' | -59.3 | NC_003085.1 | + | 3945 | 0.68 | 0.409415 |
Target: 5'- gCGGCGauguugucGCGGCcCGGggauggagccaGACGGCCGCGc -3' miRNA: 3'- -GUUGC--------UGCCGuGCCa----------CUGCCGGCGCc -5' |
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11606 | 5' | -59.3 | NC_003085.1 | + | 36009 | 0.68 | 0.409415 |
Target: 5'- -cGCGACaGCuugGCGGaUGGCGGCCaUGGg -3' miRNA: 3'- guUGCUGcCG---UGCC-ACUGCCGGcGCC- -5' |
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11606 | 5' | -59.3 | NC_003085.1 | + | 32135 | 0.68 | 0.409415 |
Target: 5'- gCGACGGgGGCGgcUGGUGGCG-CgGUGGg -3' miRNA: 3'- -GUUGCUgCCGU--GCCACUGCcGgCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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