Results 21 - 32 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11607 | 3' | -56.1 | NC_003085.1 | + | 34359 | 0.68 | 0.49609 |
Target: 5'- gCgGACCUccGGAGGCucaCAGgGUGGGCGc- -3' miRNA: 3'- -GgUUGGA--CCUCCG---GUCgCACCUGUuc -5' |
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11607 | 3' | -56.1 | NC_003085.1 | + | 9260 | 0.71 | 0.345711 |
Target: 5'- gCCAGCCagGuGAGGUUGGCGgGGAUGAGg -3' miRNA: 3'- -GGUUGGa-C-CUCCGGUCGCaCCUGUUC- -5' |
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11607 | 3' | -56.1 | NC_003085.1 | + | 7746 | 0.7 | 0.39819 |
Target: 5'- gCCGAagUUGGAGGCCgugaAGCGUGaGCGAGc -3' miRNA: 3'- -GGUUg-GACCUCCGG----UCGCACcUGUUC- -5' |
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11607 | 3' | -56.1 | NC_003085.1 | + | 48760 | 0.7 | 0.404638 |
Target: 5'- -gGACCUGcucaggccgcgcccGAGGCCGGaCGcgGGACAGGu -3' miRNA: 3'- ggUUGGAC--------------CUCCGGUC-GCa-CCUGUUC- -5' |
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11607 | 3' | -56.1 | NC_003085.1 | + | 14893 | 0.7 | 0.43011 |
Target: 5'- uUCAACCUGGcugugcggcgcacgcGGGCCGGC-UGGugGc- -3' miRNA: 3'- -GGUUGGACC---------------UCCGGUCGcACCugUuc -5' |
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11607 | 3' | -56.1 | NC_003085.1 | + | 45698 | 0.68 | 0.506493 |
Target: 5'- aCAGUCUGGuGGCCAgGgGUGGuuuCAAGg -3' miRNA: 3'- gGUUGGACCuCCGGU-CgCACCu--GUUC- -5' |
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11607 | 3' | -56.1 | NC_003085.1 | + | 11601 | 0.68 | 0.507538 |
Target: 5'- uCCGACguCUGGccGGCCAGCGcaggcagcgcuaccaGGGCAAGg -3' miRNA: 3'- -GGUUG--GACCu-CCGGUCGCa--------------CCUGUUC- -5' |
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11607 | 3' | -56.1 | NC_003085.1 | + | 4412 | 0.67 | 0.592475 |
Target: 5'- aCAGCCggcggaGGAGGCUGGCGacUGG-CAGa -3' miRNA: 3'- gGUUGGa-----CCUCCGGUCGC--ACCuGUUc -5' |
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11607 | 3' | -56.1 | NC_003085.1 | + | 18134 | 0.67 | 0.592475 |
Target: 5'- gCCGGCCUGGgacgucugcugAGGCUucGGUGUcGGGCGc- -3' miRNA: 3'- -GGUUGGACC-----------UCCGG--UCGCA-CCUGUuc -5' |
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11607 | 3' | -56.1 | NC_003085.1 | + | 9173 | 0.66 | 0.62549 |
Target: 5'- gCGACgCUGcccAGGCCGGCGcaGACGAGg -3' miRNA: 3'- gGUUG-GACc--UCCGGUCGCacCUGUUC- -5' |
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11607 | 3' | -56.1 | NC_003085.1 | + | 12704 | 0.66 | 0.63652 |
Target: 5'- gCCGACg-GcGAGGCCGGCGgccgaGGGgAGGu -3' miRNA: 3'- -GGUUGgaC-CUCCGGUCGCa----CCUgUUC- -5' |
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11607 | 3' | -56.1 | NC_003085.1 | + | 14035 | 0.73 | 0.283759 |
Target: 5'- gCCGACaUUGGAGGCgAGCG-GGAUGAc -3' miRNA: 3'- -GGUUG-GACCUCCGgUCGCaCCUGUUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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