miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11607 3' -56.1 NC_003085.1 + 15186 0.67 0.589186
Target:  5'- cCCGGCUgagccGGuGcGCCAGCGccgcgccgcggaagUGGGCGAGg -3'
miRNA:   3'- -GGUUGGa----CCuC-CGGUCGC--------------ACCUGUUC- -5'
11607 3' -56.1 NC_003085.1 + 18134 0.67 0.592475
Target:  5'- gCCGGCCUGGgacgucugcugAGGCUucGGUGUcGGGCGc- -3'
miRNA:   3'- -GGUUGGACC-----------UCCGG--UCGCA-CCUGUuc -5'
11607 3' -56.1 NC_003085.1 + 4412 0.67 0.592475
Target:  5'- aCAGCCggcggaGGAGGCUGGCGacUGG-CAGa -3'
miRNA:   3'- gGUUGGa-----CCUCCGGUCGC--ACCuGUUc -5'
11607 3' -56.1 NC_003085.1 + 42541 0.66 0.62549
Target:  5'- cCCGcuucGCCUc--GGCCAGCGcgcGGGCGAGg -3'
miRNA:   3'- -GGU----UGGAccuCCGGUCGCa--CCUGUUC- -5'
11607 3' -56.1 NC_003085.1 + 9173 0.66 0.62549
Target:  5'- gCGACgCUGcccAGGCCGGCGcaGACGAGg -3'
miRNA:   3'- gGUUG-GACc--UCCGGUCGCacCUGUUC- -5'
11607 3' -56.1 NC_003085.1 + 12704 0.66 0.63652
Target:  5'- gCCGACg-GcGAGGCCGGCGgccgaGGGgAGGu -3'
miRNA:   3'- -GGUUGgaC-CUCCGGUCGCa----CCUgUUC- -5'
11607 3' -56.1 NC_003085.1 + 13751 0.66 0.63652
Target:  5'- cCCAACg-GGAGGCC-GU-UGGACGAa -3'
miRNA:   3'- -GGUUGgaCCUCCGGuCGcACCUGUUc -5'
11607 3' -56.1 NC_003085.1 + 32363 0.66 0.63652
Target:  5'- uUCAaacGCCUGGAGaGCgCAGCuGcGGACAc- -3'
miRNA:   3'- -GGU---UGGACCUC-CG-GUCG-CaCCUGUuc -5'
11607 3' -56.1 NC_003085.1 + 43659 0.66 0.646443
Target:  5'- gCAGCCcgGGGGGCgggguugCAGCGgagacGGGCAGa -3'
miRNA:   3'- gGUUGGa-CCUCCG-------GUCGCa----CCUGUUc -5'
11607 3' -56.1 NC_003085.1 + 24391 0.66 0.647545
Target:  5'- -uGGCCUGGAcggGGCCGuGCcgGUGGACc-- -3'
miRNA:   3'- ggUUGGACCU---CCGGU-CG--CACCUGuuc -5'
11607 3' -56.1 NC_003085.1 + 46696 0.66 0.657456
Target:  5'- gCCGcuGCCUGcuuccGGCCAGCGgaguccuUGGGCAGc -3'
miRNA:   3'- -GGU--UGGACcu---CCGGUCGC-------ACCUGUUc -5'
11607 3' -56.1 NC_003085.1 + 28651 0.66 0.658557
Target:  5'- cCCuuCCUGGAGGCggggaagGGCGUccuacuGGGCAu- -3'
miRNA:   3'- -GGuuGGACCUCCGg------UCGCA------CCUGUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.