miRNA display CGI


Results 21 - 32 of 32 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11607 3' -56.1 NC_003085.1 + 40669 0.69 0.455507
Target:  5'- gCAACCUcgcGGAGccGCCGGCGcagggGGACGAc -3'
miRNA:   3'- gGUUGGA---CCUC--CGGUCGCa----CCUGUUc -5'
11607 3' -56.1 NC_003085.1 + 14893 0.7 0.43011
Target:  5'- uUCAACCUGGcugugcggcgcacgcGGGCCGGC-UGGugGc- -3'
miRNA:   3'- -GGUUGGACC---------------UCCGGUCGcACCugUuc -5'
11607 3' -56.1 NC_003085.1 + 31985 0.7 0.426276
Target:  5'- cCCGuuacGCCUGG-GGCUGGCGcugccucccuUGGACAAc -3'
miRNA:   3'- -GGU----UGGACCuCCGGUCGC----------ACCUGUUc -5'
11607 3' -56.1 NC_003085.1 + 48760 0.7 0.404638
Target:  5'- -gGACCUGcucaggccgcgcccGAGGCCGGaCGcgGGACAGGu -3'
miRNA:   3'- ggUUGGAC--------------CUCCGGUC-GCa-CCUGUUC- -5'
11607 3' -56.1 NC_003085.1 + 7746 0.7 0.39819
Target:  5'- gCCGAagUUGGAGGCCgugaAGCGUGaGCGAGc -3'
miRNA:   3'- -GGUUg-GACCUCCGG----UCGCACcUGUUC- -5'
11607 3' -56.1 NC_003085.1 + 14676 0.71 0.354104
Target:  5'- -gGACUUGGAGGCgCcguGGCGcUGGACGAa -3'
miRNA:   3'- ggUUGGACCUCCG-G---UCGC-ACCUGUUc -5'
11607 3' -56.1 NC_003085.1 + 27629 0.71 0.354104
Target:  5'- -gAGCCUGGGGggcucgccGCCAGCG-GGACGc- -3'
miRNA:   3'- ggUUGGACCUC--------CGGUCGCaCCUGUuc -5'
11607 3' -56.1 NC_003085.1 + 29303 0.71 0.354104
Target:  5'- --cACCUcGGccauGGCCAGCGcuauUGGACAGGg -3'
miRNA:   3'- gguUGGA-CCu---CCGGUCGC----ACCUGUUC- -5'
11607 3' -56.1 NC_003085.1 + 9260 0.71 0.345711
Target:  5'- gCCAGCCagGuGAGGUUGGCGgGGAUGAGg -3'
miRNA:   3'- -GGUUGGa-C-CUCCGGUCGCaCCUGUUC- -5'
11607 3' -56.1 NC_003085.1 + 14035 0.73 0.283759
Target:  5'- gCCGACaUUGGAGGCgAGCG-GGAUGAc -3'
miRNA:   3'- -GGUUG-GACCUCCGgUCGCaCCUGUUc -5'
11607 3' -56.1 NC_003085.1 + 32867 0.73 0.283759
Target:  5'- aCCGcCCgGGAGGcCCAGCGcauUGGugGAGc -3'
miRNA:   3'- -GGUuGGaCCUCC-GGUCGC---ACCugUUC- -5'
11607 3' -56.1 NC_003085.1 + 40857 1.11 0.000514
Target:  5'- gCCAACCUGGAGGCCAGCGUGGACAAGg -3'
miRNA:   3'- -GGUUGGACCUCCGGUCGCACCUGUUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.