miRNA display CGI


Results 1 - 20 of 45 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11609 3' -59.7 NC_003085.1 + 758 0.65 0.491739
Target:  5'- cGGAGUu-CGUCgccGCaguugcuugcggccUGCUGCUGUGGCc -3'
miRNA:   3'- -CCUCAcuGCAGa--CG--------------ACGGCGGCGCCG- -5'
11609 3' -59.7 NC_003085.1 + 42073 0.66 0.484756
Target:  5'- cGGGGUGAagacgaugcCGaUUUGCUGCgGCUccgugucgagGUGGCg -3'
miRNA:   3'- -CCUCACU---------GC-AGACGACGgCGG----------CGCCG- -5'
11609 3' -59.7 NC_003085.1 + 15783 0.66 0.478809
Target:  5'- gGGAGUcuGAcCGgcaugCgaauacuccuugcauUGCUgGCCGCCGUGGCc -3'
miRNA:   3'- -CCUCA--CU-GCa----G---------------ACGA-CGGCGGCGCCG- -5'
11609 3' -59.7 NC_003085.1 + 20033 0.66 0.474864
Target:  5'- uGGAG-GACGgcaUUGCcGCCGCC-CGcGCc -3'
miRNA:   3'- -CCUCaCUGCa--GACGaCGGCGGcGC-CG- -5'
11609 3' -59.7 NC_003085.1 + 48352 0.66 0.465074
Target:  5'- uGGAcaucggGACGg--GCUcGCUGCCGCGGa -3'
miRNA:   3'- -CCUca----CUGCagaCGA-CGGCGGCGCCg -5'
11609 3' -59.7 NC_003085.1 + 35140 0.66 0.45539
Target:  5'- ---uUGugGgccgGCUGCCGCaacaugaGCGGCa -3'
miRNA:   3'- ccucACugCaga-CGACGGCGg------CGCCG- -5'
11609 3' -59.7 NC_003085.1 + 9141 0.66 0.454428
Target:  5'- gGGAGcggcaccUGGCGga-GCUcGCCGCCGC-GCa -3'
miRNA:   3'- -CCUC-------ACUGCagaCGA-CGGCGGCGcCG- -5'
11609 3' -59.7 NC_003085.1 + 43510 0.66 0.445816
Target:  5'- aGGGGUGGacug-GCauCUGCCGCGGCg -3'
miRNA:   3'- -CCUCACUgcagaCGacGGCGGCGCCG- -5'
11609 3' -59.7 NC_003085.1 + 43890 0.67 0.427011
Target:  5'- aGGGcGUaGACGUg-GCgcaCCGUCGCGGCg -3'
miRNA:   3'- -CCU-CA-CUGCAgaCGac-GGCGGCGCCG- -5'
11609 3' -59.7 NC_003085.1 + 20469 0.67 0.417787
Target:  5'- -aAG-GACGUCUGCaUGCCccaacuGCCGUugGGCc -3'
miRNA:   3'- ccUCaCUGCAGACG-ACGG------CGGCG--CCG- -5'
11609 3' -59.7 NC_003085.1 + 2075 0.67 0.417787
Target:  5'- cGGAcgGUGACG-CgacgaGCgcaGCCGCCGCaccucGGCg -3'
miRNA:   3'- -CCU--CACUGCaGa----CGa--CGGCGGCG-----CCG- -5'
11609 3' -59.7 NC_003085.1 + 9775 0.67 0.415957
Target:  5'- cGGAGaGACGagccuccagcgcCUGCUGCUGCucaCGCGcGCg -3'
miRNA:   3'- -CCUCaCUGCa-----------GACGACGGCG---GCGC-CG- -5'
11609 3' -59.7 NC_003085.1 + 47080 0.67 0.408685
Target:  5'- gGGAGUaccuGCGagaGCUcGCgCGCCGCGGCc -3'
miRNA:   3'- -CCUCAc---UGCagaCGA-CG-GCGGCGCCG- -5'
11609 3' -59.7 NC_003085.1 + 7437 0.67 0.408685
Target:  5'- uGGAGaGAaggcgcccuCGUCcgUGCcgacGCCGCCGgGGCa -3'
miRNA:   3'- -CCUCaCU---------GCAG--ACGa---CGGCGGCgCCG- -5'
11609 3' -59.7 NC_003085.1 + 32433 0.67 0.408685
Target:  5'- aGGAG-GGCGUC-GUUGgaccgaaCGCCcGCGGCc -3'
miRNA:   3'- -CCUCaCUGCAGaCGACg------GCGG-CGCCG- -5'
11609 3' -59.7 NC_003085.1 + 25289 0.67 0.390858
Target:  5'- uGGAGaUGACGUcCUGUgggGCCGUCGguaGCa -3'
miRNA:   3'- -CCUC-ACUGCA-GACGa--CGGCGGCgc-CG- -5'
11609 3' -59.7 NC_003085.1 + 40428 0.67 0.390858
Target:  5'- cGGAGgcGCG-CUGcCUGCCGCCGUccaGCc -3'
miRNA:   3'- -CCUCacUGCaGAC-GACGGCGGCGc--CG- -5'
11609 3' -59.7 NC_003085.1 + 20840 0.67 0.390858
Target:  5'- uGAGgcgaccGGCGcCgaGCUcGCCGCUGCGGUg -3'
miRNA:   3'- cCUCa-----CUGCaGa-CGA-CGGCGGCGCCG- -5'
11609 3' -59.7 NC_003085.1 + 48265 0.67 0.390858
Target:  5'- cGGGGUGAgGUUgGUcaaugGUCGCCcCGGCa -3'
miRNA:   3'- -CCUCACUgCAGaCGa----CGGCGGcGCCG- -5'
11609 3' -59.7 NC_003085.1 + 13444 0.68 0.373546
Target:  5'- uGGGUGACGUgCU-CUGguaCGUCGCGGUc -3'
miRNA:   3'- cCUCACUGCA-GAcGACg--GCGGCGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.