miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11612 3' -63.1 NC_003085.1 + 44191 0.66 0.307656
Target:  5'- uUCgCCCGUgCUCGcGuACUgCCGCGCGCc- -3'
miRNA:   3'- -AG-GGGCGgGAGC-C-UGA-GGUGCGCGuc -5'
11612 3' -63.1 NC_003085.1 + 43348 0.66 0.300459
Target:  5'- cUCCCCGCCCuUCGcGGCgucguaggCgGCaaGCAGg -3'
miRNA:   3'- -AGGGGCGGG-AGC-CUGa-------GgUGcgCGUC- -5'
11612 3' -63.1 NC_003085.1 + 43255 1.09 0.000176
Target:  5'- gUCCCCGCCCUCGGACUCCACGCGCAGg -3'
miRNA:   3'- -AGGGGCGGGAGCCUGAGGUGCGCGUC- -5'
11612 3' -63.1 NC_003085.1 + 42539 0.66 0.337753
Target:  5'- cUCCCGCuucgCCUCGGcCa--GCGCGCGGg -3'
miRNA:   3'- aGGGGCG----GGAGCCuGaggUGCGCGUC- -5'
11612 3' -63.1 NC_003085.1 + 40112 0.67 0.293393
Target:  5'- cCCCCGaCCUCGGcugcugguccugGCcgCCGCGCGUc- -3'
miRNA:   3'- aGGGGCgGGAGCC------------UGa-GGUGCGCGuc -5'
11612 3' -63.1 NC_003085.1 + 39718 0.68 0.224108
Target:  5'- uUCCaagcgCGCCCU-GGACUCCAUGaCGCc- -3'
miRNA:   3'- -AGGg----GCGGGAgCCUGAGGUGC-GCGuc -5'
11612 3' -63.1 NC_003085.1 + 39305 0.7 0.182875
Target:  5'- gCCCgGUCCUcgCGGuACUCCccgcCGCGCAGu -3'
miRNA:   3'- aGGGgCGGGA--GCC-UGAGGu---GCGCGUC- -5'
11612 3' -63.1 NC_003085.1 + 37877 0.67 0.293393
Target:  5'- gCCCUGCCC-CGuuCcagCCAgGCGCGGg -3'
miRNA:   3'- aGGGGCGGGaGCcuGa--GGUgCGCGUC- -5'
11612 3' -63.1 NC_003085.1 + 36852 0.71 0.148496
Target:  5'- aUCCagCGCCCg-GGGCgCCACGCGCGu -3'
miRNA:   3'- -AGGg-GCGGGagCCUGaGGUGCGCGUc -5'
11612 3' -63.1 NC_003085.1 + 31334 0.7 0.158141
Target:  5'- aCCuuGUCCgcgCGGACguaccgguaggccgCCAUGCGCAGc -3'
miRNA:   3'- aGGggCGGGa--GCCUGa-------------GGUGCGCGUC- -5'
11612 3' -63.1 NC_003085.1 + 31008 0.69 0.192508
Target:  5'- gUCCaCgCGCuCCUCcaGGACgUCCACGaCGCGGg -3'
miRNA:   3'- -AGG-G-GCG-GGAG--CCUG-AGGUGC-GCGUC- -5'
11612 3' -63.1 NC_003085.1 + 30410 0.71 0.144637
Target:  5'- gCUCCGCCgCgcgccgCGGAauCUCCACGaCGCAGc -3'
miRNA:   3'- aGGGGCGG-Ga-----GCCU--GAGGUGC-GCGUC- -5'
11612 3' -63.1 NC_003085.1 + 29367 0.66 0.314984
Target:  5'- gCCCCGCCaccugCGGcACgUCacaGCGCGCGu -3'
miRNA:   3'- aGGGGCGGga---GCC-UG-AGg--UGCGCGUc -5'
11612 3' -63.1 NC_003085.1 + 28511 0.68 0.241502
Target:  5'- gCCaCCGCaCCUCGuGCcagaCGCGCGCGGg -3'
miRNA:   3'- aGG-GGCG-GGAGCcUGag--GUGCGCGUC- -5'
11612 3' -63.1 NC_003085.1 + 27412 0.66 0.337753
Target:  5'- -aCCUGCCCgCGGGCgcaaucgCCGguacaGCGCAGc -3'
miRNA:   3'- agGGGCGGGaGCCUGa------GGUg----CGCGUC- -5'
11612 3' -63.1 NC_003085.1 + 27134 0.67 0.293393
Target:  5'- uUCCUgGCCUgCGGAUUCaugGCGCGGg -3'
miRNA:   3'- -AGGGgCGGGaGCCUGAGgugCGCGUC- -5'
11612 3' -63.1 NC_003085.1 + 26624 0.66 0.333105
Target:  5'- cUCCUCGUCUgCGGACUCaaacugagguggcaACGCGCc- -3'
miRNA:   3'- -AGGGGCGGGaGCCUGAGg-------------UGCGCGuc -5'
11612 3' -63.1 NC_003085.1 + 25239 0.68 0.235582
Target:  5'- gCgCCGCCCU-GGugcGCUCCGCG-GCGGg -3'
miRNA:   3'- aGgGGCGGGAgCC---UGAGGUGCgCGUC- -5'
11612 3' -63.1 NC_003085.1 + 24980 0.69 0.20779
Target:  5'- aUCCUGCCgcagaacauCUCGGACacgUCCGCgGUGCAGa -3'
miRNA:   3'- aGGGGCGG---------GAGCCUG---AGGUG-CGCGUC- -5'
11612 3' -63.1 NC_003085.1 + 23672 0.67 0.269031
Target:  5'- aCgCCGCCCaggcguccacgcagCGGGC-CCGCGCaGCAGc -3'
miRNA:   3'- aGgGGCGGGa-------------GCCUGaGGUGCG-CGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.