Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11613 | 3' | -53.6 | NC_003085.1 | + | 11202 | 0.7 | 0.588598 |
Target: 5'- cCGUCGUCGUCGcGCGgAAGuAGGUGg--- -3' miRNA: 3'- -GCAGCAGCAGC-UGC-UUC-UCCACgucg -5' |
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11613 | 3' | -53.6 | NC_003085.1 | + | 23129 | 0.71 | 0.523727 |
Target: 5'- cCGUC-UgGUCGACGAAGcGGUuguagucggGCGGCa -3' miRNA: 3'- -GCAGcAgCAGCUGCUUCuCCA---------CGUCG- -5' |
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11613 | 3' | -53.6 | NC_003085.1 | + | 46884 | 0.72 | 0.48202 |
Target: 5'- cCGUgacCG-CGUCGAUGgcGuaGGGUGCGGCa -3' miRNA: 3'- -GCA---GCaGCAGCUGCuuC--UCCACGUCG- -5' |
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11613 | 3' | -53.6 | NC_003085.1 | + | 13164 | 0.73 | 0.413231 |
Target: 5'- gCGUCGUUGUCGAUGAGGcGGgagAGCc -3' miRNA: 3'- -GCAGCAGCAGCUGCUUCuCCacgUCG- -5' |
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11613 | 3' | -53.6 | NC_003085.1 | + | 26529 | 0.74 | 0.367962 |
Target: 5'- cCGUCGcCGUCGACGcggccucGGAGGgcuucgccccgGCAGCc -3' miRNA: 3'- -GCAGCaGCAGCUGCu------UCUCCa----------CGUCG- -5' |
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11613 | 3' | -53.6 | NC_003085.1 | + | 43431 | 0.77 | 0.240727 |
Target: 5'- gCGUCG-CGUCGuCGuGAGGGGUGCcGCg -3' miRNA: 3'- -GCAGCaGCAGCuGC-UUCUCCACGuCG- -5' |
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11613 | 3' | -53.6 | NC_003085.1 | + | 45135 | 1.13 | 0.000838 |
Target: 5'- cCGUCGUCGUCGACGAAGAGGUGCAGCg -3' miRNA: 3'- -GCAGCAGCAGCUGCUUCUCCACGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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