miRNA display CGI


Results 21 - 40 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11615 3' -57.2 NC_003085.1 + 41845 0.67 0.530105
Target:  5'- -uGAGUCC-CGcCCGGcgcuGGUCCACCucgcggugcGCCg -3'
miRNA:   3'- gcUUCAGGaGC-GGCC----UCAGGUGG---------UGG- -5'
11615 3' -57.2 NC_003085.1 + 36166 0.68 0.519717
Target:  5'- uGAAGggCUCGCUGGGGccUCCGauguUCGCCg -3'
miRNA:   3'- gCUUCagGAGCGGCCUC--AGGU----GGUGG- -5'
11615 3' -57.2 NC_003085.1 + 42479 0.68 0.503267
Target:  5'- aGGAGUCCgaagCgGCCGGAG-CCaacggagagggcaucGCUGCCg -3'
miRNA:   3'- gCUUCAGGa---G-CGGCCUCaGG---------------UGGUGG- -5'
11615 3' -57.2 NC_003085.1 + 14512 0.68 0.489062
Target:  5'- uGAGGcgCCUcCGCCGGccAGcaacUCCGCCGCg -3'
miRNA:   3'- gCUUCa-GGA-GCGGCC--UC----AGGUGGUGg -5'
11615 3' -57.2 NC_003085.1 + 28035 0.68 0.479031
Target:  5'- aCGgcGUCCUCcuGUCGGAG-CCGagCGCCu -3'
miRNA:   3'- -GCuuCAGGAG--CGGCCUCaGGUg-GUGG- -5'
11615 3' -57.2 NC_003085.1 + 4090 0.68 0.469103
Target:  5'- aGAAGUUCUggguggGCCGGgcGGUCCaggcugccaGCCACCu -3'
miRNA:   3'- gCUUCAGGAg-----CGGCC--UCAGG---------UGGUGG- -5'
11615 3' -57.2 NC_003085.1 + 11292 0.69 0.448604
Target:  5'- aGggGaacaCCUgCGCCgcggcggGGAGcgCCACCACCa -3'
miRNA:   3'- gCuuCa---GGA-GCGG-------CCUCa-GGUGGUGG- -5'
11615 3' -57.2 NC_003085.1 + 27305 0.69 0.439971
Target:  5'- uGcuGUCCcuucaUCGCCuGGG-CCACCACCu -3'
miRNA:   3'- gCuuCAGG-----AGCGGcCUCaGGUGGUGG- -5'
11615 3' -57.2 NC_003085.1 + 48319 0.69 0.439971
Target:  5'- -cGAGU-CUCGgCGGAGUCCcCCAgCCg -3'
miRNA:   3'- gcUUCAgGAGCgGCCUCAGGuGGU-GG- -5'
11615 3' -57.2 NC_003085.1 + 8669 0.69 0.430492
Target:  5'- gCGuGG-CCUugggCGCCGGGGUgCCGuCCGCCa -3'
miRNA:   3'- -GCuUCaGGA----GCGGCCUCA-GGU-GGUGG- -5'
11615 3' -57.2 NC_003085.1 + 38105 0.69 0.421133
Target:  5'- aCGguGUCCUgGCUGacgccGAGuucuUCCGCCACCu -3'
miRNA:   3'- -GCuuCAGGAgCGGC-----CUC----AGGUGGUGG- -5'
11615 3' -57.2 NC_003085.1 + 46436 0.69 0.411898
Target:  5'- uGGAGUaguggaCCUCGaagucgagcacCCaGAGUCCAUCACCa -3'
miRNA:   3'- gCUUCA------GGAGC-----------GGcCUCAGGUGGUGG- -5'
11615 3' -57.2 NC_003085.1 + 25322 0.69 0.411898
Target:  5'- ---cGUCauaGCCGGAGUaCCAgCCGCCg -3'
miRNA:   3'- gcuuCAGgagCGGCCUCA-GGU-GGUGG- -5'
11615 3' -57.2 NC_003085.1 + 45799 0.7 0.402789
Target:  5'- uCGAGGUcaaCCUCGUCGuGccacuccGUCUGCCACCg -3'
miRNA:   3'- -GCUUCA---GGAGCGGC-Cu------CAGGUGGUGG- -5'
11615 3' -57.2 NC_003085.1 + 18923 0.7 0.402789
Target:  5'- uGGAGUUgUCGCCauGAGcgCCAUCGCCu -3'
miRNA:   3'- gCUUCAGgAGCGGc-CUCa-GGUGGUGG- -5'
11615 3' -57.2 NC_003085.1 + 753 0.7 0.367661
Target:  5'- aGAGGUgCUgGUgGGcgAGUCCGCCACg -3'
miRNA:   3'- gCUUCAgGAgCGgCC--UCAGGUGGUGg -5'
11615 3' -57.2 NC_003085.1 + 12466 0.7 0.364266
Target:  5'- uCGAAGUCCccaucaaggcgccgUCGCUcacgaaucagagGGAGcacuacagcagccUCCACCGCCa -3'
miRNA:   3'- -GCUUCAGG--------------AGCGG------------CCUC-------------AGGUGGUGG- -5'
11615 3' -57.2 NC_003085.1 + 11202 0.71 0.350904
Target:  5'- cCGucGUCgUCGCgCGGaAGUagguggCCACCGCCg -3'
miRNA:   3'- -GCuuCAGgAGCG-GCC-UCA------GGUGGUGG- -5'
11615 3' -57.2 NC_003085.1 + 46666 0.72 0.310672
Target:  5'- cCGAGGcgCUUCGCCgccgccuGGAGcgCCGCCGCUg -3'
miRNA:   3'- -GCUUCa-GGAGCGG-------CCUCa-GGUGGUGG- -5'
11615 3' -57.2 NC_003085.1 + 22957 0.72 0.289405
Target:  5'- gCGAAG-CCggacgaGCCGGcccAGUCUGCCACCc -3'
miRNA:   3'- -GCUUCaGGag----CGGCC---UCAGGUGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.