miRNA display CGI


Results 21 - 40 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11615 3' -57.2 NC_003085.1 + 25322 0.69 0.411898
Target:  5'- ---cGUCauaGCCGGAGUaCCAgCCGCCg -3'
miRNA:   3'- gcuuCAGgagCGGCCUCA-GGU-GGUGG- -5'
11615 3' -57.2 NC_003085.1 + 25759 0.67 0.531148
Target:  5'- aCGAGGcauUCCUCGCgGGcaAGUCCGacgugcagguggggaCGCCg -3'
miRNA:   3'- -GCUUC---AGGAGCGgCC--UCAGGUg--------------GUGG- -5'
11615 3' -57.2 NC_003085.1 + 26564 0.72 0.289405
Target:  5'- cCGGcAG-CCUcCGCCGGAGUCgCACCAg- -3'
miRNA:   3'- -GCU-UCaGGA-GCGGCCUCAG-GUGGUgg -5'
11615 3' -57.2 NC_003085.1 + 27305 0.69 0.439971
Target:  5'- uGcuGUCCcuucaUCGCCuGGG-CCACCACCu -3'
miRNA:   3'- gCuuCAGG-----AGCGGcCUCaGGUGGUGG- -5'
11615 3' -57.2 NC_003085.1 + 28035 0.68 0.479031
Target:  5'- aCGgcGUCCUCcuGUCGGAG-CCGagCGCCu -3'
miRNA:   3'- -GCuuCAGGAG--CGGCCUCaGGUg-GUGG- -5'
11615 3' -57.2 NC_003085.1 + 29666 0.66 0.615323
Target:  5'- aGAAGUCa-UGUCGGGcGUCCACC-UCg -3'
miRNA:   3'- gCUUCAGgaGCGGCCU-CAGGUGGuGG- -5'
11615 3' -57.2 NC_003085.1 + 31004 0.67 0.57234
Target:  5'- uGAAGUCCacgCGCUccuccaGGAcGUCCACgACg -3'
miRNA:   3'- gCUUCAGGa--GCGG------CCU-CAGGUGgUGg -5'
11615 3' -57.2 NC_003085.1 + 31157 0.66 0.593769
Target:  5'- uCGGAcggCCagCGCCGGGgcGUgCACCGCCc -3'
miRNA:   3'- -GCUUca-GGa-GCGGCCU--CAgGUGGUGG- -5'
11615 3' -57.2 NC_003085.1 + 32358 0.74 0.202633
Target:  5'- aGgcGUCCUUGCCGuGGUCC-CUGCCg -3'
miRNA:   3'- gCuuCAGGAGCGGCcUCAGGuGGUGG- -5'
11615 3' -57.2 NC_003085.1 + 36166 0.68 0.519717
Target:  5'- uGAAGggCUCGCUGGGGccUCCGauguUCGCCg -3'
miRNA:   3'- gCUUCagGAGCGGCCUC--AGGU----GGUGG- -5'
11615 3' -57.2 NC_003085.1 + 38105 0.69 0.421133
Target:  5'- aCGguGUCCUgGCUGacgccGAGuucuUCCGCCACCu -3'
miRNA:   3'- -GCuuCAGGAgCGGC-----CUC----AGGUGGUGG- -5'
11615 3' -57.2 NC_003085.1 + 39308 0.66 0.626126
Target:  5'- --cGGUCCUCG-CGGuacUCC-CCGCCg -3'
miRNA:   3'- gcuUCAGGAGCgGCCuc-AGGuGGUGG- -5'
11615 3' -57.2 NC_003085.1 + 40385 0.67 0.57234
Target:  5'- uGGAGccgCaCUUGCUGGGG-CCgaACCACCa -3'
miRNA:   3'- gCUUCa--G-GAGCGGCCUCaGG--UGGUGG- -5'
11615 3' -57.2 NC_003085.1 + 40471 0.67 0.551099
Target:  5'- aGGuAGUCCUCuaccggGCCGGugaAGUCCGCgagGCCg -3'
miRNA:   3'- gCU-UCAGGAG------CGGCC---UCAGGUGg--UGG- -5'
11615 3' -57.2 NC_003085.1 + 41845 0.67 0.530105
Target:  5'- -uGAGUCC-CGcCCGGcgcuGGUCCACCucgcggugcGCCg -3'
miRNA:   3'- gcUUCAGGaGC-GGCC----UCAGGUGG---------UGG- -5'
11615 3' -57.2 NC_003085.1 + 41947 0.73 0.23669
Target:  5'- ---cGUCCUCGUCGGugauGUCCugCaACCg -3'
miRNA:   3'- gcuuCAGGAGCGGCCu---CAGGugG-UGG- -5'
11615 3' -57.2 NC_003085.1 + 42479 0.68 0.503267
Target:  5'- aGGAGUCCgaagCgGCCGGAG-CCaacggagagggcaucGCUGCCg -3'
miRNA:   3'- gCUUCAGGa---G-CGGCCUCaGG---------------UGGUGG- -5'
11615 3' -57.2 NC_003085.1 + 42693 0.67 0.57234
Target:  5'- gGAAGggcUCUCGCCG---UCCGCCACg -3'
miRNA:   3'- gCUUCa--GGAGCGGCcucAGGUGGUGg -5'
11615 3' -57.2 NC_003085.1 + 42900 0.74 0.207998
Target:  5'- cCGAGGUCCUgCGCgUGGAuUCCACCguugACCg -3'
miRNA:   3'- -GCUUCAGGA-GCG-GCCUcAGGUGG----UGG- -5'
11615 3' -57.2 NC_003085.1 + 45059 0.66 0.615323
Target:  5'- ----cUCCUcCGCCGGcuGUCCGguauCCGCCg -3'
miRNA:   3'- gcuucAGGA-GCGGCCu-CAGGU----GGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.