miRNA display CGI


Results 1 - 20 of 46 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11615 3' -57.2 NC_003085.1 + 753 0.7 0.367661
Target:  5'- aGAGGUgCUgGUgGGcgAGUCCGCCACg -3'
miRNA:   3'- gCUUCAgGAgCGgCC--UCAGGUGGUGg -5'
11615 3' -57.2 NC_003085.1 + 1013 0.67 0.565945
Target:  5'- uGAGGUggccuaugcucgcggCCUCGCCguccaugcGGAGgaagCCAgCGCCg -3'
miRNA:   3'- gCUUCA---------------GGAGCGG--------CCUCa---GGUgGUGG- -5'
11615 3' -57.2 NC_003085.1 + 4090 0.68 0.469103
Target:  5'- aGAAGUUCUggguggGCCGGgcGGUCCaggcugccaGCCACCu -3'
miRNA:   3'- gCUUCAGGAg-----CGGCC--UCAGG---------UGGUGG- -5'
11615 3' -57.2 NC_003085.1 + 5701 0.66 0.615323
Target:  5'- -uGAGUCCaaGCCcGcGcCCACCACCg -3'
miRNA:   3'- gcUUCAGGagCGGcCuCaGGUGGUGG- -5'
11615 3' -57.2 NC_003085.1 + 6157 0.67 0.561692
Target:  5'- aCGA--UgCUCGCCGGAcGUUCAUCAgCCu -3'
miRNA:   3'- -GCUucAgGAGCGGCCU-CAGGUGGU-GG- -5'
11615 3' -57.2 NC_003085.1 + 8669 0.69 0.430492
Target:  5'- gCGuGG-CCUugggCGCCGGGGUgCCGuCCGCCa -3'
miRNA:   3'- -GCuUCaGGA----GCGGCCUCA-GGU-GGUGG- -5'
11615 3' -57.2 NC_003085.1 + 8753 0.67 0.540568
Target:  5'- aGAGGUCCa--CCGGcgcGUCCAgCACCc -3'
miRNA:   3'- gCUUCAGGagcGGCCu--CAGGUgGUGG- -5'
11615 3' -57.2 NC_003085.1 + 10089 0.67 0.561692
Target:  5'- -uGAGcCCcCGCCGGcGUCggaACCGCCg -3'
miRNA:   3'- gcUUCaGGaGCGGCCuCAGg--UGGUGG- -5'
11615 3' -57.2 NC_003085.1 + 10259 0.66 0.604535
Target:  5'- gGggGUCCguaCCGGAG-CCugCguuGCCg -3'
miRNA:   3'- gCuuCAGGagcGGCCUCaGGugG---UGG- -5'
11615 3' -57.2 NC_003085.1 + 11202 0.71 0.350904
Target:  5'- cCGucGUCgUCGCgCGGaAGUagguggCCACCGCCg -3'
miRNA:   3'- -GCuuCAGgAGCG-GCC-UCA------GGUGGUGG- -5'
11615 3' -57.2 NC_003085.1 + 11292 0.69 0.448604
Target:  5'- aGggGaacaCCUgCGCCgcggcggGGAGcgCCACCACCa -3'
miRNA:   3'- gCuuCa---GGA-GCGG-------CCUCa-GGUGGUGG- -5'
11615 3' -57.2 NC_003085.1 + 12466 0.7 0.364266
Target:  5'- uCGAAGUCCccaucaaggcgccgUCGCUcacgaaucagagGGAGcacuacagcagccUCCACCGCCa -3'
miRNA:   3'- -GCUUCAGG--------------AGCGG------------CCUC-------------AGGUGGUGG- -5'
11615 3' -57.2 NC_003085.1 + 12645 0.66 0.583035
Target:  5'- aCGGAGUUgcgugucgcgCUCGCCGGAGUggagaCGCUgaugaugacGCCg -3'
miRNA:   3'- -GCUUCAG----------GAGCGGCCUCAg----GUGG---------UGG- -5'
11615 3' -57.2 NC_003085.1 + 14512 0.68 0.489062
Target:  5'- uGAGGcgCCUcCGCCGGccAGcaacUCCGCCGCg -3'
miRNA:   3'- gCUUCa-GGA-GCGGCC--UC----AGGUGGUGg -5'
11615 3' -57.2 NC_003085.1 + 18923 0.7 0.402789
Target:  5'- uGGAGUUgUCGCCauGAGcgCCAUCGCCu -3'
miRNA:   3'- gCUUCAGgAGCGGc-CUCa-GGUGGUGG- -5'
11615 3' -57.2 NC_003085.1 + 21825 0.66 0.601302
Target:  5'- gCGgcGUCC-CGCUGGcggcgagccccccaGGcUCCACaCACCg -3'
miRNA:   3'- -GCuuCAGGaGCGGCC--------------UC-AGGUG-GUGG- -5'
11615 3' -57.2 NC_003085.1 + 22957 0.72 0.289405
Target:  5'- gCGAAG-CCggacgaGCCGGcccAGUCUGCCACCc -3'
miRNA:   3'- -GCUUCaGGag----CGGCC---UCAGGUGGUGG- -5'
11615 3' -57.2 NC_003085.1 + 23791 0.66 0.614244
Target:  5'- gCGAAuucGUCCg-GCCGGuagucgcAGUCCGCagCACCg -3'
miRNA:   3'- -GCUU---CAGGagCGGCC-------UCAGGUG--GUGG- -5'
11615 3' -57.2 NC_003085.1 + 24758 0.66 0.626126
Target:  5'- gCGAAG-CCgccgaUGCCGccGUCCAgCACCa -3'
miRNA:   3'- -GCUUCaGGa----GCGGCcuCAGGUgGUGG- -5'
11615 3' -57.2 NC_003085.1 + 25209 0.73 0.255451
Target:  5'- ----cUCCUUGCCGGAGUUCugCAgCa -3'
miRNA:   3'- gcuucAGGAGCGGCCUCAGGugGUgG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.