miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11615 3' -57.2 NC_003085.1 + 46759 1.12 0.000447
Target:  5'- cCGAAGUCCUCGCCGGAGUCCACCACCu -3'
miRNA:   3'- -GCUUCAGGAGCGGCCUCAGGUGGUGG- -5'
11615 3' -57.2 NC_003085.1 + 45059 0.66 0.615323
Target:  5'- ----cUCCUcCGCCGGcuGUCCGguauCCGCCg -3'
miRNA:   3'- gcuucAGGA-GCGGCCu-CAGGU----GGUGG- -5'
11615 3' -57.2 NC_003085.1 + 29666 0.66 0.615323
Target:  5'- aGAAGUCa-UGUCGGGcGUCCACC-UCg -3'
miRNA:   3'- gCUUCAGgaGCGGCCU-CAGGUGGuGG- -5'
11615 3' -57.2 NC_003085.1 + 23791 0.66 0.614244
Target:  5'- gCGAAuucGUCCg-GCCGGuagucgcAGUCCGCagCACCg -3'
miRNA:   3'- -GCUU---CAGGagCGGCC-------UCAGGUG--GUGG- -5'
11615 3' -57.2 NC_003085.1 + 10089 0.67 0.561692
Target:  5'- -uGAGcCCcCGCCGGcGUCggaACCGCCg -3'
miRNA:   3'- gcUUCaGGaGCGGCCuCAGg--UGGUGG- -5'
11615 3' -57.2 NC_003085.1 + 6157 0.67 0.561692
Target:  5'- aCGA--UgCUCGCCGGAcGUUCAUCAgCCu -3'
miRNA:   3'- -GCUucAgGAGCGGCCU-CAGGUGGU-GG- -5'
11615 3' -57.2 NC_003085.1 + 49337 0.67 0.558508
Target:  5'- ---cGUCC-CGCCcucuccccacauugGGGGcCCGCCGCCc -3'
miRNA:   3'- gcuuCAGGaGCGG--------------CCUCaGGUGGUGG- -5'
11615 3' -57.2 NC_003085.1 + 25759 0.67 0.531148
Target:  5'- aCGAGGcauUCCUCGCgGGcaAGUCCGacgugcagguggggaCGCCg -3'
miRNA:   3'- -GCUUC---AGGAGCGgCC--UCAGGUg--------------GUGG- -5'
11615 3' -57.2 NC_003085.1 + 41845 0.67 0.530105
Target:  5'- -uGAGUCC-CGcCCGGcgcuGGUCCACCucgcggugcGCCg -3'
miRNA:   3'- gcUUCAGGaGC-GGCC----UCAGGUGG---------UGG- -5'
11615 3' -57.2 NC_003085.1 + 28035 0.68 0.479031
Target:  5'- aCGgcGUCCUCcuGUCGGAG-CCGagCGCCu -3'
miRNA:   3'- -GCuuCAGGAG--CGGCCUCaGGUg-GUGG- -5'
11615 3' -57.2 NC_003085.1 + 42900 0.74 0.207998
Target:  5'- cCGAGGUCCUgCGCgUGGAuUCCACCguugACCg -3'
miRNA:   3'- -GCUUCAGGA-GCG-GCCUcAGGUGG----UGG- -5'
11615 3' -57.2 NC_003085.1 + 22957 0.72 0.289405
Target:  5'- gCGAAG-CCggacgaGCCGGcccAGUCUGCCACCc -3'
miRNA:   3'- -GCUUCaGGag----CGGCC---UCAGGUGGUGG- -5'
11615 3' -57.2 NC_003085.1 + 46666 0.72 0.310672
Target:  5'- cCGAGGcgCUUCGCCgccgccuGGAGcgCCGCCGCUg -3'
miRNA:   3'- -GCUUCa-GGAGCGG-------CCUCa-GGUGGUGG- -5'
11615 3' -57.2 NC_003085.1 + 12466 0.7 0.364266
Target:  5'- uCGAAGUCCccaucaaggcgccgUCGCUcacgaaucagagGGAGcacuacagcagccUCCACCGCCa -3'
miRNA:   3'- -GCUUCAGG--------------AGCGG------------CCUC-------------AGGUGGUGG- -5'
11615 3' -57.2 NC_003085.1 + 18923 0.7 0.402789
Target:  5'- uGGAGUUgUCGCCauGAGcgCCAUCGCCu -3'
miRNA:   3'- gCUUCAGgAGCGGc-CUCa-GGUGGUGG- -5'
11615 3' -57.2 NC_003085.1 + 46436 0.69 0.411898
Target:  5'- uGGAGUaguggaCCUCGaagucgagcacCCaGAGUCCAUCACCa -3'
miRNA:   3'- gCUUCA------GGAGC-----------GGcCUCAGGUGGUGG- -5'
11615 3' -57.2 NC_003085.1 + 48319 0.69 0.439971
Target:  5'- -cGAGU-CUCGgCGGAGUCCcCCAgCCg -3'
miRNA:   3'- gcUUCAgGAGCgGCCUCAGGuGGU-GG- -5'
11615 3' -57.2 NC_003085.1 + 32358 0.74 0.202633
Target:  5'- aGgcGUCCUUGCCGuGGUCC-CUGCCg -3'
miRNA:   3'- gCuuCAGGAGCGGCcUCAGGuGGUGG- -5'
11615 3' -57.2 NC_003085.1 + 24758 0.66 0.626126
Target:  5'- gCGAAG-CCgccgaUGCCGccGUCCAgCACCa -3'
miRNA:   3'- -GCUUCaGGa----GCGGCcuCAGGUgGUGG- -5'
11615 3' -57.2 NC_003085.1 + 5701 0.66 0.615323
Target:  5'- -uGAGUCCaaGCCcGcGcCCACCACCg -3'
miRNA:   3'- gcUUCAGGagCGGcCuCaGGUGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.