miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11615 3' -57.2 NC_003085.1 + 21825 0.66 0.601302
Target:  5'- gCGgcGUCC-CGCUGGcggcgagccccccaGGcUCCACaCACCg -3'
miRNA:   3'- -GCuuCAGGaGCGGCC--------------UC-AGGUG-GUGG- -5'
11615 3' -57.2 NC_003085.1 + 11292 0.69 0.448604
Target:  5'- aGggGaacaCCUgCGCCgcggcggGGAGcgCCACCACCa -3'
miRNA:   3'- gCuuCa---GGA-GCGG-------CCUCa-GGUGGUGG- -5'
11615 3' -57.2 NC_003085.1 + 8669 0.69 0.430492
Target:  5'- gCGuGG-CCUugggCGCCGGGGUgCCGuCCGCCa -3'
miRNA:   3'- -GCuUCaGGA----GCGGCCUCA-GGU-GGUGG- -5'
11615 3' -57.2 NC_003085.1 + 32358 0.74 0.202633
Target:  5'- aGgcGUCCUUGCCGuGGUCC-CUGCCg -3'
miRNA:   3'- gCuuCAGGAGCGGCcUCAGGuGGUGG- -5'
11615 3' -57.2 NC_003085.1 + 40385 0.67 0.57234
Target:  5'- uGGAGccgCaCUUGCUGGGG-CCgaACCACCa -3'
miRNA:   3'- gCUUCa--G-GAGCGGCCUCaGG--UGGUGG- -5'
11615 3' -57.2 NC_003085.1 + 31004 0.67 0.57234
Target:  5'- uGAAGUCCacgCGCUccuccaGGAcGUCCACgACg -3'
miRNA:   3'- gCUUCAGGa--GCGG------CCU-CAGGUGgUGg -5'
11615 3' -57.2 NC_003085.1 + 39308 0.66 0.626126
Target:  5'- --cGGUCCUCG-CGGuacUCC-CCGCCg -3'
miRNA:   3'- gcuUCAGGAGCgGCCuc-AGGuGGUGG- -5'
11615 3' -57.2 NC_003085.1 + 24758 0.66 0.626126
Target:  5'- gCGAAG-CCgccgaUGCCGccGUCCAgCACCa -3'
miRNA:   3'- -GCUUCaGGa----GCGGCcuCAGGUgGUGG- -5'
11615 3' -57.2 NC_003085.1 + 5701 0.66 0.615323
Target:  5'- -uGAGUCCaaGCCcGcGcCCACCACCg -3'
miRNA:   3'- gcUUCAGGagCGGcCuCaGGUGGUGG- -5'
11615 3' -57.2 NC_003085.1 + 4090 0.68 0.469103
Target:  5'- aGAAGUUCUggguggGCCGGgcGGUCCaggcugccaGCCACCu -3'
miRNA:   3'- gCUUCAGGAg-----CGGCC--UCAGG---------UGGUGG- -5'
11615 3' -57.2 NC_003085.1 + 36166 0.68 0.519717
Target:  5'- uGAAGggCUCGCUGGGGccUCCGauguUCGCCg -3'
miRNA:   3'- gCUUCagGAGCGGCCUC--AGGU----GGUGG- -5'
11615 3' -57.2 NC_003085.1 + 8753 0.67 0.540568
Target:  5'- aGAGGUCCa--CCGGcgcGUCCAgCACCc -3'
miRNA:   3'- gCUUCAGGagcGGCCu--CAGGUgGUGG- -5'
11615 3' -57.2 NC_003085.1 + 31157 0.66 0.593769
Target:  5'- uCGGAcggCCagCGCCGGGgcGUgCACCGCCc -3'
miRNA:   3'- -GCUUca-GGa-GCGGCCU--CAgGUGGUGG- -5'
11615 3' -57.2 NC_003085.1 + 42479 0.68 0.503267
Target:  5'- aGGAGUCCgaagCgGCCGGAG-CCaacggagagggcaucGCUGCCg -3'
miRNA:   3'- gCUUCAGGa---G-CGGCCUCaGG---------------UGGUGG- -5'
11615 3' -57.2 NC_003085.1 + 12645 0.66 0.583035
Target:  5'- aCGGAGUUgcgugucgcgCUCGCCGGAGUggagaCGCUgaugaugacGCCg -3'
miRNA:   3'- -GCUUCAG----------GAGCGGCCUCAg----GUGG---------UGG- -5'
11615 3' -57.2 NC_003085.1 + 40471 0.67 0.551099
Target:  5'- aGGuAGUCCUCuaccggGCCGGugaAGUCCGCgagGCCg -3'
miRNA:   3'- gCU-UCAGGAG------CGGCC---UCAGGUGg--UGG- -5'
11615 3' -57.2 NC_003085.1 + 14512 0.68 0.489062
Target:  5'- uGAGGcgCCUcCGCCGGccAGcaacUCCGCCGCg -3'
miRNA:   3'- gCUUCa-GGA-GCGGCC--UC----AGGUGGUGg -5'
11615 3' -57.2 NC_003085.1 + 27305 0.69 0.439971
Target:  5'- uGcuGUCCcuucaUCGCCuGGG-CCACCACCu -3'
miRNA:   3'- gCuuCAGG-----AGCGGcCUCaGGUGGUGG- -5'
11615 3' -57.2 NC_003085.1 + 42693 0.67 0.57234
Target:  5'- gGAAGggcUCUCGCCG---UCCGCCACg -3'
miRNA:   3'- gCUUCa--GGAGCGGCcucAGGUGGUGg -5'
11615 3' -57.2 NC_003085.1 + 1013 0.67 0.565945
Target:  5'- uGAGGUggccuaugcucgcggCCUCGCCguccaugcGGAGgaagCCAgCGCCg -3'
miRNA:   3'- gCUUCA---------------GGAGCGG--------CCUCa---GGUgGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.