miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11615 5' -56.8 NC_003085.1 + 2501 0.66 0.586074
Target:  5'- gGCGugGcugacgGACGGUGuGCCcGCGUCg-- -3'
miRNA:   3'- -CGCugCua----CUGCCAC-CGG-UGCAGgaa -5'
11615 5' -56.8 NC_003085.1 + 2646 0.66 0.629828
Target:  5'- gGCGGCGAggUGAUGccgcccaaggacGUGGCCACcGUCa-- -3'
miRNA:   3'- -CGCUGCU--ACUGC------------CACCGGUG-CAGgaa -5'
11615 5' -56.8 NC_003085.1 + 5565 0.7 0.350317
Target:  5'- gGCGccGCGA--ACGGUGcGCCACGUCUa- -3'
miRNA:   3'- -CGC--UGCUacUGCCAC-CGGUGCAGGaa -5'
11615 5' -56.8 NC_003085.1 + 7514 0.68 0.500872
Target:  5'- uGCGucuCGGUGGCGGcaaguggGGCCAUG-CCg- -3'
miRNA:   3'- -CGCu--GCUACUGCCa------CCGGUGCaGGaa -5'
11615 5' -56.8 NC_003085.1 + 7703 0.67 0.542925
Target:  5'- cGCGAgGGUGACGucaugaaGCCAUGUCCc- -3'
miRNA:   3'- -CGCUgCUACUGCcac----CGGUGCAGGaa -5'
11615 5' -56.8 NC_003085.1 + 8499 0.66 0.629828
Target:  5'- uGCGAgCGcUGGCGG-GGCCACaGggacgCCUg -3'
miRNA:   3'- -CGCU-GCuACUGCCaCCGGUG-Ca----GGAa -5'
11615 5' -56.8 NC_003085.1 + 8605 0.69 0.431074
Target:  5'- cGCGugG-UGACGGagaaGGaaucCCGCGUCCUg -3'
miRNA:   3'- -CGCugCuACUGCCa---CC----GGUGCAGGAa -5'
11615 5' -56.8 NC_003085.1 + 11958 0.7 0.384854
Target:  5'- -gGugGuguUGAUGGUGGCCACGaCUUg -3'
miRNA:   3'- cgCugCu--ACUGCCACCGGUGCaGGAa -5'
11615 5' -56.8 NC_003085.1 + 16166 0.66 0.586074
Target:  5'- cGUGACGccG-UGGUGGCCGCG-CUg- -3'
miRNA:   3'- -CGCUGCuaCuGCCACCGGUGCaGGaa -5'
11615 5' -56.8 NC_003085.1 + 19344 0.68 0.457346
Target:  5'- gGCGGCgGAUGGCguccguguagaggaGGcGGCCGgCGUCCUUc -3'
miRNA:   3'- -CGCUG-CUACUG--------------CCaCCGGU-GCAGGAA- -5'
11615 5' -56.8 NC_003085.1 + 19706 0.77 0.129692
Target:  5'- uGCGcACGAgguggggcgcGACGGcGGCCACGUCCUg -3'
miRNA:   3'- -CGC-UGCUa---------CUGCCaCCGGUGCAGGAa -5'
11615 5' -56.8 NC_003085.1 + 20094 0.67 0.532291
Target:  5'- aUGGCGuucUGcCGGgcGGCCAUGUCCUg -3'
miRNA:   3'- cGCUGCu--ACuGCCa-CCGGUGCAGGAa -5'
11615 5' -56.8 NC_003085.1 + 20141 0.66 0.575209
Target:  5'- cGCGGCGGUGcccuguccaauaGCGcUGGCCAUGgCCg- -3'
miRNA:   3'- -CGCUGCUAC------------UGCcACCGGUGCaGGaa -5'
11615 5' -56.8 NC_003085.1 + 20642 0.72 0.280915
Target:  5'- cGCgGACGAUGAC-GUGGCuCGCGUCg-- -3'
miRNA:   3'- -CG-CUGCUACUGcCACCG-GUGCAGgaa -5'
11615 5' -56.8 NC_003085.1 + 22621 0.69 0.42157
Target:  5'- uCGAgGGUGGCGGgGGCaCACG-CCUg -3'
miRNA:   3'- cGCUgCUACUGCCaCCG-GUGCaGGAa -5'
11615 5' -56.8 NC_003085.1 + 23313 0.66 0.618863
Target:  5'- cGCGACGu---CGGUGGCCAgcaGcCCg- -3'
miRNA:   3'- -CGCUGCuacuGCCACCGGUg--CaGGaa -5'
11615 5' -56.8 NC_003085.1 + 23598 0.68 0.505016
Target:  5'- gGCGGCGAguugcucGACGGUgacgauuuugaaguaGGCCAgGUUCUc -3'
miRNA:   3'- -CGCUGCUa------CUGCCA---------------CCGGUgCAGGAa -5'
11615 5' -56.8 NC_003085.1 + 23800 0.71 0.325897
Target:  5'- aCGACGAUG-CGGaUGuacuCCACGUCCUUg -3'
miRNA:   3'- cGCUGCUACuGCC-ACc---GGUGCAGGAA- -5'
11615 5' -56.8 NC_003085.1 + 24968 0.7 0.376011
Target:  5'- -gGAUGGuguUGAUGGUGGCCACcgccgccauGUCCUc -3'
miRNA:   3'- cgCUGCU---ACUGCCACCGGUG---------CAGGAa -5'
11615 5' -56.8 NC_003085.1 + 25166 0.68 0.49058
Target:  5'- gGCGACcguggccuGGUGGCGGUGGCgAUGagcgCCa- -3'
miRNA:   3'- -CGCUG--------CUACUGCCACCGgUGCa---GGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.