miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11615 5' -56.8 NC_003085.1 + 46794 1.08 0.000753
Target:  5'- cGCGACGAUGACGGUGGCCACGUCCUUg -3'
miRNA:   3'- -CGCUGCUACUGCCACCGGUGCAGGAA- -5'
11615 5' -56.8 NC_003085.1 + 38271 0.66 0.618863
Target:  5'- cGCGACGAcGACGGaUGG-CGCGagCUc -3'
miRNA:   3'- -CGCUGCUaCUGCC-ACCgGUGCagGAa -5'
11615 5' -56.8 NC_003085.1 + 38234 0.66 0.596977
Target:  5'- uCGACGGcagcacgucGGCGGUGGCCACcuacuUCCg- -3'
miRNA:   3'- cGCUGCUa--------CUGCCACCGGUGc----AGGaa -5'
11615 5' -56.8 NC_003085.1 + 32036 0.66 0.596977
Target:  5'- gGCG-CGGUGAUGGgGGCgGCGaguggCCUg -3'
miRNA:   3'- -CGCuGCUACUGCCaCCGgUGCa----GGAa -5'
11615 5' -56.8 NC_003085.1 + 25362 0.66 0.590431
Target:  5'- -gGACGGUGACGGgcacgccgacggcgGGCUucaccguCGUCCa- -3'
miRNA:   3'- cgCUGCUACUGCCa-------------CCGGu------GCAGGaa -5'
11615 5' -56.8 NC_003085.1 + 16166 0.66 0.586074
Target:  5'- cGUGACGccG-UGGUGGCCGCG-CUg- -3'
miRNA:   3'- -CGCUGCuaCuGCCACCGGUGCaGGaa -5'
11615 5' -56.8 NC_003085.1 + 48527 0.66 0.575209
Target:  5'- gGCGGCGAgGGCGcG-GGCCuuccaGUCCUc -3'
miRNA:   3'- -CGCUGCUaCUGC-CaCCGGug---CAGGAa -5'
11615 5' -56.8 NC_003085.1 + 7703 0.67 0.542925
Target:  5'- cGCGAgGGUGACGucaugaaGCCAUGUCCc- -3'
miRNA:   3'- -CGCUgCUACUGCcac----CGGUGCAGGaa -5'
11615 5' -56.8 NC_003085.1 + 25166 0.68 0.49058
Target:  5'- gGCGACcguggccuGGUGGCGGUGGCgAUGagcgCCa- -3'
miRNA:   3'- -CGCUG--------CUACUGCCACCGgUGCa---GGaa -5'
11615 5' -56.8 NC_003085.1 + 44654 0.68 0.480386
Target:  5'- aGUGuCGGUGcCGGgcuuugGGCC-CGUCCUg -3'
miRNA:   3'- -CGCuGCUACuGCCa-----CCGGuGCAGGAa -5'
11615 5' -56.8 NC_003085.1 + 8605 0.69 0.431074
Target:  5'- cGCGugG-UGACGGagaaGGaaucCCGCGUCCUg -3'
miRNA:   3'- -CGCugCuACUGCCa---CC----GGUGCAGGAa -5'
11615 5' -56.8 NC_003085.1 + 5565 0.7 0.350317
Target:  5'- gGCGccGCGA--ACGGUGcGCCACGUCUa- -3'
miRNA:   3'- -CGC--UGCUacUGCCAC-CGGUGCAGGaa -5'
11615 5' -56.8 NC_003085.1 + 20642 0.72 0.280915
Target:  5'- cGCgGACGAUGAC-GUGGCuCGCGUCg-- -3'
miRNA:   3'- -CG-CUGCUACUGcCACCG-GUGCAGgaa -5'
11615 5' -56.8 NC_003085.1 + 35729 0.72 0.273916
Target:  5'- aCGGCGAgGGCagGGUGGCCgAUGUCCUc -3'
miRNA:   3'- cGCUGCUaCUG--CCACCGG-UGCAGGAa -5'
11615 5' -56.8 NC_003085.1 + 2501 0.66 0.586074
Target:  5'- gGCGugGcugacgGACGGUGuGCCcGCGUCg-- -3'
miRNA:   3'- -CGCugCua----CUGCCAC-CGG-UGCAGgaa -5'
11615 5' -56.8 NC_003085.1 + 34014 0.66 0.60791
Target:  5'- cGCGGCGAUGAUucaGGgauaccGCuCGCGUCCc- -3'
miRNA:   3'- -CGCUGCUACUG---CCac----CG-GUGCAGGaa -5'
11615 5' -56.8 NC_003085.1 + 23313 0.66 0.618863
Target:  5'- cGCGACGu---CGGUGGCCAgcaGcCCg- -3'
miRNA:   3'- -CGCUGCuacuGCCACCGGUg--CaGGaa -5'
11615 5' -56.8 NC_003085.1 + 8499 0.66 0.629828
Target:  5'- uGCGAgCGcUGGCGG-GGCCACaGggacgCCUg -3'
miRNA:   3'- -CGCU-GCuACUGCCaCCGGUG-Ca----GGAa -5'
11615 5' -56.8 NC_003085.1 + 42111 0.66 0.629828
Target:  5'- aGCGGCGcccaggGGCGcGUGuagcCCGCGUCCUc -3'
miRNA:   3'- -CGCUGCua----CUGC-CACc---GGUGCAGGAa -5'
11615 5' -56.8 NC_003085.1 + 19706 0.77 0.129692
Target:  5'- uGCGcACGAgguggggcgcGACGGcGGCCACGUCCUg -3'
miRNA:   3'- -CGC-UGCUa---------CUGCCaCCGGUGCAGGAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.