miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11616 5' -60.9 NC_003085.1 + 48847 0.66 0.436903
Target:  5'- -cGCCa---GCCuCGAGCGCgcccaGGACGGc -3'
miRNA:   3'- gaCGGagaaCGG-GCUCGCGg----CCUGCC- -5'
11616 5' -60.9 NC_003085.1 + 43651 0.66 0.4267
Target:  5'- -cGCCUCcagcaGCCCGGGgGgCGGgguugcaGCGGa -3'
miRNA:   3'- gaCGGAGaa---CGGGCUCgCgGCC-------UGCC- -5'
11616 5' -60.9 NC_003085.1 + 7584 0.66 0.42486
Target:  5'- gCUGCgUCaggGCuacacgucggcgcaCCGcgagguggaccAGCGCCGGGCGGg -3'
miRNA:   3'- -GACGgAGaa-CG--------------GGC-----------UCGCGGCCUGCC- -5'
11616 5' -60.9 NC_003085.1 + 25776 0.66 0.418458
Target:  5'- gCUGCUgcgCggGCCCGcugcguGGaCGCCuGGGCGGc -3'
miRNA:   3'- -GACGGa--GaaCGGGC------UC-GCGG-CCUGCC- -5'
11616 5' -60.9 NC_003085.1 + 24367 0.66 0.418458
Target:  5'- -gGCCUUUggcGgCCGGGCcaucaaugGCCuGGACGGg -3'
miRNA:   3'- gaCGGAGAa--CgGGCUCG--------CGG-CCUGCC- -5'
11616 5' -60.9 NC_003085.1 + 38552 0.66 0.418458
Target:  5'- -aGCC-CUUGCUggUGAGCGaCgCGGAgGGg -3'
miRNA:   3'- gaCGGaGAACGG--GCUCGC-G-GCCUgCC- -5'
11616 5' -60.9 NC_003085.1 + 2814 0.66 0.413018
Target:  5'- -cGCCUCggcaUcacuggcaacacgucUGCCCG-GCaGCCGGGCGa -3'
miRNA:   3'- gaCGGAG----A---------------ACGGGCuCG-CGGCCUGCc -5'
11616 5' -60.9 NC_003085.1 + 32269 0.66 0.409415
Target:  5'- -gGCCUCggugGCCCGGGacucgucuccCGUCaGGugGGc -3'
miRNA:   3'- gaCGGAGaa--CGGGCUC----------GCGG-CCugCC- -5'
11616 5' -60.9 NC_003085.1 + 8587 0.66 0.409415
Target:  5'- aUGCCgccgucGUCCGAGCGCgUGGugACGGa -3'
miRNA:   3'- gACGGagaa--CGGGCUCGCG-GCC--UGCC- -5'
11616 5' -60.9 NC_003085.1 + 29534 0.66 0.391699
Target:  5'- -aGCgUCUUGgCgCGGGCGUCGuGCGGc -3'
miRNA:   3'- gaCGgAGAACgG-GCUCGCGGCcUGCC- -5'
11616 5' -60.9 NC_003085.1 + 15157 0.66 0.383031
Target:  5'- -cGCCUCggugcccUGCCCGcGaCGCUcGGCGGa -3'
miRNA:   3'- gaCGGAGa------ACGGGCuC-GCGGcCUGCC- -5'
11616 5' -60.9 NC_003085.1 + 10863 0.66 0.383031
Target:  5'- -gGCCUCUU-CCU--GCGCUGGACGc -3'
miRNA:   3'- gaCGGAGAAcGGGcuCGCGGCCUGCc -5'
11616 5' -60.9 NC_003085.1 + 24540 0.67 0.371954
Target:  5'- cCUGUCUCcgucUGCgCGAGCGCUGuuacucggcgaugaGGCGGc -3'
miRNA:   3'- -GACGGAGa---ACGgGCUCGCGGC--------------CUGCC- -5'
11616 5' -60.9 NC_003085.1 + 47582 0.67 0.36608
Target:  5'- gCUGCCUgauggGCCgaUGAGCGCaaGACGGa -3'
miRNA:   3'- -GACGGAgaa--CGG--GCUCGCGgcCUGCC- -5'
11616 5' -60.9 NC_003085.1 + 24637 0.67 0.357801
Target:  5'- -cGCCUCggcGuCCUGGuugaaagccgcGCGCCGcGACGGg -3'
miRNA:   3'- gaCGGAGaa-C-GGGCU-----------CGCGGC-CUGCC- -5'
11616 5' -60.9 NC_003085.1 + 18086 0.67 0.355343
Target:  5'- -gGCCUCUUugcgGCCgGGGUcgagcuucuugucgGCgCGGGCGGg -3'
miRNA:   3'- gaCGGAGAA----CGGgCUCG--------------CG-GCCUGCC- -5'
11616 5' -60.9 NC_003085.1 + 17998 0.67 0.349654
Target:  5'- aCUGCCUCcUGUCCGAcgGCGCgaGGcCGu -3'
miRNA:   3'- -GACGGAGaACGGGCU--CGCGg-CCuGCc -5'
11616 5' -60.9 NC_003085.1 + 5881 0.67 0.34164
Target:  5'- -cGaCCUC-UGCCguGGCGCCGGGuCGGu -3'
miRNA:   3'- gaC-GGAGaACGGgcUCGCGGCCU-GCC- -5'
11616 5' -60.9 NC_003085.1 + 27345 0.68 0.318401
Target:  5'- gCUGCUgcg-GCgCCGGGCucuGCUGGGCGGc -3'
miRNA:   3'- -GACGGagaaCG-GGCUCG---CGGCCUGCC- -5'
11616 5' -60.9 NC_003085.1 + 6912 0.68 0.310923
Target:  5'- -aGCC-CUcGCCCGcGCGCUGGccgaggcgaaGCGGg -3'
miRNA:   3'- gaCGGaGAaCGGGCuCGCGGCC----------UGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.