miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11616 5' -60.9 NC_003085.1 + 48985 0.68 0.308706
Target:  5'- -aGCCUC--GCCCGugggcaccugcaacAGCGCCGGcUGGc -3'
miRNA:   3'- gaCGGAGaaCGGGC--------------UCGCGGCCuGCC- -5'
11616 5' -60.9 NC_003085.1 + 24050 0.68 0.289294
Target:  5'- -aGCCg-UUGCCguUGAGgGCCGGACGc -3'
miRNA:   3'- gaCGGagAACGG--GCUCgCGGCCUGCc -5'
11616 5' -60.9 NC_003085.1 + 28735 0.69 0.275542
Target:  5'- -gGCUUCcgUGagacgcaCCGGGUGCgGGACGGg -3'
miRNA:   3'- gaCGGAGa-ACg------GGCUCGCGgCCUGCC- -5'
11616 5' -60.9 NC_003085.1 + 41992 0.69 0.275542
Target:  5'- -cGCCUCgccguguuccUGCCCcggcGGCGUCGGcACGGa -3'
miRNA:   3'- gaCGGAGa---------ACGGGc---UCGCGGCC-UGCC- -5'
11616 5' -60.9 NC_003085.1 + 40011 0.69 0.255901
Target:  5'- -gGCCUCgaGCUCguccauGAGCGCCGGcACGu -3'
miRNA:   3'- gaCGGAGaaCGGG------CUCGCGGCC-UGCc -5'
11616 5' -60.9 NC_003085.1 + 5651 0.7 0.237422
Target:  5'- cCUGUgaCUUGCgCGAGCGCC--GCGGa -3'
miRNA:   3'- -GACGgaGAACGgGCUCGCGGccUGCC- -5'
11616 5' -60.9 NC_003085.1 + 43504 0.7 0.237422
Target:  5'- -cGCCUCcagcaGCCCG-GCG-UGGACGGg -3'
miRNA:   3'- gaCGGAGaa---CGGGCuCGCgGCCUGCC- -5'
11616 5' -60.9 NC_003085.1 + 42835 0.7 0.231516
Target:  5'- uUGCgCUCacGUCCG-GCGCCGGACu- -3'
miRNA:   3'- gACG-GAGaaCGGGCuCGCGGCCUGcc -5'
11616 5' -60.9 NC_003085.1 + 5458 0.7 0.225733
Target:  5'- -cGCCgag-GCCCGAGUGCgGGAguUGGa -3'
miRNA:   3'- gaCGGagaaCGGGCUCGCGgCCU--GCC- -5'
11616 5' -60.9 NC_003085.1 + 3920 0.7 0.220074
Target:  5'- -cGCCUCgaacugGaagCCGAGCGCCGcGGCGa -3'
miRNA:   3'- gaCGGAGaa----Cg--GGCUCGCGGC-CUGCc -5'
11616 5' -60.9 NC_003085.1 + 47104 0.7 0.220074
Target:  5'- -cGUaUUCgaGCCCGucGCGCUGGACGGg -3'
miRNA:   3'- gaCG-GAGaaCGGGCu-CGCGGCCUGCC- -5'
11616 5' -60.9 NC_003085.1 + 6751 0.7 0.220074
Target:  5'- aCUGCCcg--GCCUGccGCGCCGuGGCGGa -3'
miRNA:   3'- -GACGGagaaCGGGCu-CGCGGC-CUGCC- -5'
11616 5' -60.9 NC_003085.1 + 31999 0.71 0.203819
Target:  5'- gUGCCUUUcGCCaguaCGAGCGCCGGGa-- -3'
miRNA:   3'- gACGGAGAaCGG----GCUCGCGGCCUgcc -5'
11616 5' -60.9 NC_003085.1 + 48771 0.71 0.198637
Target:  5'- -gGCCgc--GCCCGAG-GCCGGACGcGg -3'
miRNA:   3'- gaCGGagaaCGGGCUCgCGGCCUGC-C- -5'
11616 5' -60.9 NC_003085.1 + 6620 0.72 0.179042
Target:  5'- -gGuCCUCaaGUCCG-GCGCCGGACGu -3'
miRNA:   3'- gaC-GGAGaaCGGGCuCGCGGCCUGCc -5'
11616 5' -60.9 NC_003085.1 + 25712 0.72 0.174418
Target:  5'- gCUGCCUCUcaccgacgUGUCCuucGGCGCCacGGugGGg -3'
miRNA:   3'- -GACGGAGA--------ACGGGc--UCGCGG--CCugCC- -5'
11616 5' -60.9 NC_003085.1 + 8486 0.74 0.120082
Target:  5'- -aGCC-CUUGCCgcuugCGAGCGCUGG-CGGg -3'
miRNA:   3'- gaCGGaGAACGG-----GCUCGCGGCCuGCC- -5'
11616 5' -60.9 NC_003085.1 + 47953 1.1 0.000223
Target:  5'- gCUGCCUCUUGCCCGAGCGCCGGACGGg -3'
miRNA:   3'- -GACGGAGAACGGGCUCGCGGCCUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.