miRNA display CGI


Results 21 - 38 of 38 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11616 5' -60.9 NC_003085.1 + 25776 0.66 0.418458
Target:  5'- gCUGCUgcgCggGCCCGcugcguGGaCGCCuGGGCGGc -3'
miRNA:   3'- -GACGGa--GaaCGGGC------UC-GCGG-CCUGCC- -5'
11616 5' -60.9 NC_003085.1 + 27345 0.68 0.318401
Target:  5'- gCUGCUgcg-GCgCCGGGCucuGCUGGGCGGc -3'
miRNA:   3'- -GACGGagaaCG-GGCUCG---CGGCCUGCC- -5'
11616 5' -60.9 NC_003085.1 + 28735 0.69 0.275542
Target:  5'- -gGCUUCcgUGagacgcaCCGGGUGCgGGACGGg -3'
miRNA:   3'- gaCGGAGa-ACg------GGCUCGCGgCCUGCC- -5'
11616 5' -60.9 NC_003085.1 + 29534 0.66 0.391699
Target:  5'- -aGCgUCUUGgCgCGGGCGUCGuGCGGc -3'
miRNA:   3'- gaCGgAGAACgG-GCUCGCGGCcUGCC- -5'
11616 5' -60.9 NC_003085.1 + 31999 0.71 0.203819
Target:  5'- gUGCCUUUcGCCaguaCGAGCGCCGGGa-- -3'
miRNA:   3'- gACGGAGAaCGG----GCUCGCGGCCUgcc -5'
11616 5' -60.9 NC_003085.1 + 32269 0.66 0.409415
Target:  5'- -gGCCUCggugGCCCGGGacucgucuccCGUCaGGugGGc -3'
miRNA:   3'- gaCGGAGaa--CGGGCUC----------GCGG-CCugCC- -5'
11616 5' -60.9 NC_003085.1 + 38552 0.66 0.418458
Target:  5'- -aGCC-CUUGCUggUGAGCGaCgCGGAgGGg -3'
miRNA:   3'- gaCGGaGAACGG--GCUCGC-G-GCCUgCC- -5'
11616 5' -60.9 NC_003085.1 + 40011 0.69 0.255901
Target:  5'- -gGCCUCgaGCUCguccauGAGCGCCGGcACGu -3'
miRNA:   3'- gaCGGAGaaCGGG------CUCGCGGCC-UGCc -5'
11616 5' -60.9 NC_003085.1 + 41992 0.69 0.275542
Target:  5'- -cGCCUCgccguguuccUGCCCcggcGGCGUCGGcACGGa -3'
miRNA:   3'- gaCGGAGa---------ACGGGc---UCGCGGCC-UGCC- -5'
11616 5' -60.9 NC_003085.1 + 42835 0.7 0.231516
Target:  5'- uUGCgCUCacGUCCG-GCGCCGGACu- -3'
miRNA:   3'- gACG-GAGaaCGGGCuCGCGGCCUGcc -5'
11616 5' -60.9 NC_003085.1 + 43504 0.7 0.237422
Target:  5'- -cGCCUCcagcaGCCCG-GCG-UGGACGGg -3'
miRNA:   3'- gaCGGAGaa---CGGGCuCGCgGCCUGCC- -5'
11616 5' -60.9 NC_003085.1 + 43651 0.66 0.4267
Target:  5'- -cGCCUCcagcaGCCCGGGgGgCGGgguugcaGCGGa -3'
miRNA:   3'- gaCGGAGaa---CGGGCUCgCgGCC-------UGCC- -5'
11616 5' -60.9 NC_003085.1 + 47104 0.7 0.220074
Target:  5'- -cGUaUUCgaGCCCGucGCGCUGGACGGg -3'
miRNA:   3'- gaCG-GAGaaCGGGCu-CGCGGCCUGCC- -5'
11616 5' -60.9 NC_003085.1 + 47582 0.67 0.36608
Target:  5'- gCUGCCUgauggGCCgaUGAGCGCaaGACGGa -3'
miRNA:   3'- -GACGGAgaa--CGG--GCUCGCGgcCUGCC- -5'
11616 5' -60.9 NC_003085.1 + 47953 1.1 0.000223
Target:  5'- gCUGCCUCUUGCCCGAGCGCCGGACGGg -3'
miRNA:   3'- -GACGGAGAACGGGCUCGCGGCCUGCC- -5'
11616 5' -60.9 NC_003085.1 + 48771 0.71 0.198637
Target:  5'- -gGCCgc--GCCCGAG-GCCGGACGcGg -3'
miRNA:   3'- gaCGGagaaCGGGCUCgCGGCCUGC-C- -5'
11616 5' -60.9 NC_003085.1 + 48847 0.66 0.436903
Target:  5'- -cGCCa---GCCuCGAGCGCgcccaGGACGGc -3'
miRNA:   3'- gaCGGagaaCGG-GCUCGCGg----CCUGCC- -5'
11616 5' -60.9 NC_003085.1 + 48985 0.68 0.308706
Target:  5'- -aGCCUC--GCCCGugggcaccugcaacAGCGCCGGcUGGc -3'
miRNA:   3'- gaCGGAGaaCGGGC--------------UCGCGGCCuGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.