Results 21 - 38 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11616 | 5' | -60.9 | NC_003085.1 | + | 42835 | 0.7 | 0.231516 |
Target: 5'- uUGCgCUCacGUCCG-GCGCCGGACu- -3' miRNA: 3'- gACG-GAGaaCGGGCuCGCGGCCUGcc -5' |
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11616 | 5' | -60.9 | NC_003085.1 | + | 5458 | 0.7 | 0.225733 |
Target: 5'- -cGCCgag-GCCCGAGUGCgGGAguUGGa -3' miRNA: 3'- gaCGGagaaCGGGCUCGCGgCCU--GCC- -5' |
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11616 | 5' | -60.9 | NC_003085.1 | + | 31999 | 0.71 | 0.203819 |
Target: 5'- gUGCCUUUcGCCaguaCGAGCGCCGGGa-- -3' miRNA: 3'- gACGGAGAaCGG----GCUCGCGGCCUgcc -5' |
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11616 | 5' | -60.9 | NC_003085.1 | + | 48771 | 0.71 | 0.198637 |
Target: 5'- -gGCCgc--GCCCGAG-GCCGGACGcGg -3' miRNA: 3'- gaCGGagaaCGGGCUCgCGGCCUGC-C- -5' |
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11616 | 5' | -60.9 | NC_003085.1 | + | 25712 | 0.72 | 0.174418 |
Target: 5'- gCUGCCUCUcaccgacgUGUCCuucGGCGCCacGGugGGg -3' miRNA: 3'- -GACGGAGA--------ACGGGc--UCGCGG--CCugCC- -5' |
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11616 | 5' | -60.9 | NC_003085.1 | + | 5881 | 0.67 | 0.34164 |
Target: 5'- -cGaCCUC-UGCCguGGCGCCGGGuCGGu -3' miRNA: 3'- gaC-GGAGaACGGgcUCGCGGCCU-GCC- -5' |
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11616 | 5' | -60.9 | NC_003085.1 | + | 17998 | 0.67 | 0.349654 |
Target: 5'- aCUGCCUCcUGUCCGAcgGCGCgaGGcCGu -3' miRNA: 3'- -GACGGAGaACGGGCU--CGCGg-CCuGCc -5' |
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11616 | 5' | -60.9 | NC_003085.1 | + | 48847 | 0.66 | 0.436903 |
Target: 5'- -cGCCa---GCCuCGAGCGCgcccaGGACGGc -3' miRNA: 3'- gaCGGagaaCGG-GCUCGCGg----CCUGCC- -5' |
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11616 | 5' | -60.9 | NC_003085.1 | + | 7584 | 0.66 | 0.42486 |
Target: 5'- gCUGCgUCaggGCuacacgucggcgcaCCGcgagguggaccAGCGCCGGGCGGg -3' miRNA: 3'- -GACGgAGaa-CG--------------GGC-----------UCGCGGCCUGCC- -5' |
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11616 | 5' | -60.9 | NC_003085.1 | + | 25776 | 0.66 | 0.418458 |
Target: 5'- gCUGCUgcgCggGCCCGcugcguGGaCGCCuGGGCGGc -3' miRNA: 3'- -GACGGa--GaaCGGGC------UC-GCGG-CCUGCC- -5' |
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11616 | 5' | -60.9 | NC_003085.1 | + | 2814 | 0.66 | 0.413018 |
Target: 5'- -cGCCUCggcaUcacuggcaacacgucUGCCCG-GCaGCCGGGCGa -3' miRNA: 3'- gaCGGAG----A---------------ACGGGCuCG-CGGCCUGCc -5' |
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11616 | 5' | -60.9 | NC_003085.1 | + | 32269 | 0.66 | 0.409415 |
Target: 5'- -gGCCUCggugGCCCGGGacucgucuccCGUCaGGugGGc -3' miRNA: 3'- gaCGGAGaa--CGGGCUC----------GCGG-CCugCC- -5' |
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11616 | 5' | -60.9 | NC_003085.1 | + | 29534 | 0.66 | 0.391699 |
Target: 5'- -aGCgUCUUGgCgCGGGCGUCGuGCGGc -3' miRNA: 3'- gaCGgAGAACgG-GCUCGCGGCcUGCC- -5' |
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11616 | 5' | -60.9 | NC_003085.1 | + | 15157 | 0.66 | 0.383031 |
Target: 5'- -cGCCUCggugcccUGCCCGcGaCGCUcGGCGGa -3' miRNA: 3'- gaCGGAGa------ACGGGCuC-GCGGcCUGCC- -5' |
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11616 | 5' | -60.9 | NC_003085.1 | + | 24540 | 0.67 | 0.371954 |
Target: 5'- cCUGUCUCcgucUGCgCGAGCGCUGuuacucggcgaugaGGCGGc -3' miRNA: 3'- -GACGGAGa---ACGgGCUCGCGGC--------------CUGCC- -5' |
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11616 | 5' | -60.9 | NC_003085.1 | + | 24637 | 0.67 | 0.357801 |
Target: 5'- -cGCCUCggcGuCCUGGuugaaagccgcGCGCCGcGACGGg -3' miRNA: 3'- gaCGGAGaa-C-GGGCU-----------CGCGGC-CUGCC- -5' |
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11616 | 5' | -60.9 | NC_003085.1 | + | 18086 | 0.67 | 0.355343 |
Target: 5'- -gGCCUCUUugcgGCCgGGGUcgagcuucuugucgGCgCGGGCGGg -3' miRNA: 3'- gaCGGAGAA----CGGgCUCG--------------CG-GCCUGCC- -5' |
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11616 | 5' | -60.9 | NC_003085.1 | + | 8486 | 0.74 | 0.120082 |
Target: 5'- -aGCC-CUUGCCgcuugCGAGCGCUGG-CGGg -3' miRNA: 3'- gaCGGaGAACGG-----GCUCGCGGCCuGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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