miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11641 5' -52 NC_003094.2 + 58672 0.66 0.982616
Target:  5'- cGUUCGgaaCACCGguccaaaacaauAugGCGCAGCCGacGCa -3'
miRNA:   3'- -CAAGUug-GUGGC------------UugCGUGUUGGC--CG- -5'
11641 5' -52 NC_003094.2 + 119568 0.66 0.982412
Target:  5'- aGUUCAACauCGCggugCGAGCGCACGACuuauaccaugcauCGGUc -3'
miRNA:   3'- -CAAGUUG--GUG----GCUUGCGUGUUG-------------GCCG- -5'
11641 5' -52 NC_003094.2 + 63202 0.66 0.978196
Target:  5'- aUUCGACC-CCG-GCGgACuuacaAACCGGUa -3'
miRNA:   3'- cAAGUUGGuGGCuUGCgUG-----UUGGCCG- -5'
11641 5' -52 NC_003094.2 + 12386 0.66 0.978196
Target:  5'- uUUUGACCAaaUUGAACGUGCAcauACCGGa -3'
miRNA:   3'- cAAGUUGGU--GGCUUGCGUGU---UGGCCg -5'
11641 5' -52 NC_003094.2 + 48748 0.66 0.976722
Target:  5'- uUUCAuauauUCugCGGACGgACAcgguuaucugucaaaACCGGCg -3'
miRNA:   3'- cAAGUu----GGugGCUUGCgUGU---------------UGGCCG- -5'
11641 5' -52 NC_003094.2 + 100695 0.66 0.975699
Target:  5'- uGUUCc-CCGgCGGACGUACAuccguuGCUGGUg -3'
miRNA:   3'- -CAAGuuGGUgGCUUGCGUGU------UGGCCG- -5'
11641 5' -52 NC_003094.2 + 81540 0.66 0.972998
Target:  5'- --gCGACCAccgcCCGAACGCcuGCGACCuccGCc -3'
miRNA:   3'- caaGUUGGU----GGCUUGCG--UGUUGGc--CG- -5'
11641 5' -52 NC_003094.2 + 50366 0.67 0.970086
Target:  5'- uGUUCGACCAUCGAcuuuaGUAgGGCCauguuGGCu -3'
miRNA:   3'- -CAAGUUGGUGGCUug---CGUgUUGG-----CCG- -5'
11641 5' -52 NC_003094.2 + 45707 0.67 0.970086
Target:  5'- --aCAAUCGCCaAGCGUGCcauuACCGGUu -3'
miRNA:   3'- caaGUUGGUGGcUUGCGUGu---UGGCCG- -5'
11641 5' -52 NC_003094.2 + 114172 0.67 0.966957
Target:  5'- -aUCGAUCAgCGAACGCACuacauuGCCa-- -3'
miRNA:   3'- caAGUUGGUgGCUUGCGUGu-----UGGccg -5'
11641 5' -52 NC_003094.2 + 41172 0.67 0.966957
Target:  5'- --aCAACCACauacAACGU--GACCGGCg -3'
miRNA:   3'- caaGUUGGUGgc--UUGCGugUUGGCCG- -5'
11641 5' -52 NC_003094.2 + 17184 0.67 0.963603
Target:  5'- -gUCAcuACCGguuUCGGugGCAacACCGGCg -3'
miRNA:   3'- caAGU--UGGU---GGCUugCGUguUGGCCG- -5'
11641 5' -52 NC_003094.2 + 39281 0.67 0.963603
Target:  5'- aUUCGGaauCUGGACGCGCAguuauAUCGGCa -3'
miRNA:   3'- cAAGUUgguGGCUUGCGUGU-----UGGCCG- -5'
11641 5' -52 NC_003094.2 + 66329 0.67 0.960019
Target:  5'- --cCGACCAuUCGGACGguCAucuuAUCGGCa -3'
miRNA:   3'- caaGUUGGU-GGCUUGCguGU----UGGCCG- -5'
11641 5' -52 NC_003094.2 + 99905 0.67 0.958898
Target:  5'- -cUCGGCUGCagguagcuuaGAACGCAUAauuaaagcguaaauACCGGCu -3'
miRNA:   3'- caAGUUGGUGg---------CUUGCGUGU--------------UGGCCG- -5'
11641 5' -52 NC_003094.2 + 28165 0.67 0.956198
Target:  5'- -gUUGGCCACgGAcaaguuguAgGCGCGACgGGCa -3'
miRNA:   3'- caAGUUGGUGgCU--------UgCGUGUUGgCCG- -5'
11641 5' -52 NC_003094.2 + 51038 0.68 0.952136
Target:  5'- --gCGcCCGCCGAcaucGCGCACGggaugaacGCCGuGCa -3'
miRNA:   3'- caaGUuGGUGGCU----UGCGUGU--------UGGC-CG- -5'
11641 5' -52 NC_003094.2 + 45613 0.68 0.943273
Target:  5'- aUUCAACgacguCAUCGAAUGCGgAGCCaaaGGCa -3'
miRNA:   3'- cAAGUUG-----GUGGCUUGCGUgUUGG---CCG- -5'
11641 5' -52 NC_003094.2 + 112249 0.68 0.938466
Target:  5'- --gCGACCACUGGcgccagcaaACGUACGGCC-GCg -3'
miRNA:   3'- caaGUUGGUGGCU---------UGCGUGUUGGcCG- -5'
11641 5' -52 NC_003094.2 + 113471 0.69 0.904274
Target:  5'- -gUCAGCCguaACCGAagACGCagucGCAGCCGaaGCa -3'
miRNA:   3'- caAGUUGG---UGGCU--UGCG----UGUUGGC--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.