Results 21 - 26 of 26 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 11641 | 5' | -52 | NC_003094.2 | + | 50366 | 0.67 | 0.970086 |
|
Target: 5'- uGUUCGACCAUCGAcuuuaGUAgGGCCauguuGGCu -3' miRNA: 3'- -CAAGUUGGUGGCUug---CGUgUUGG-----CCG- -5' |
|||||||
| 11641 | 5' | -52 | NC_003094.2 | + | 100695 | 0.66 | 0.975699 |
|
Target: 5'- uGUUCc-CCGgCGGACGUACAuccguuGCUGGUg -3' miRNA: 3'- -CAAGuuGGUgGCUUGCGUGU------UGGCCG- -5' |
|||||||
| 11641 | 5' | -52 | NC_003094.2 | + | 48748 | 0.66 | 0.976722 |
|
Target: 5'- uUUCAuauauUCugCGGACGgACAcgguuaucugucaaaACCGGCg -3' miRNA: 3'- cAAGUu----GGugGCUUGCgUGU---------------UGGCCG- -5' |
|||||||
| 11641 | 5' | -52 | NC_003094.2 | + | 63202 | 0.66 | 0.978196 |
|
Target: 5'- aUUCGACC-CCG-GCGgACuuacaAACCGGUa -3' miRNA: 3'- cAAGUUGGuGGCuUGCgUG-----UUGGCCG- -5' |
|||||||
| 11641 | 5' | -52 | NC_003094.2 | + | 58672 | 0.66 | 0.982616 |
|
Target: 5'- cGUUCGgaaCACCGguccaaaacaauAugGCGCAGCCGacGCa -3' miRNA: 3'- -CAAGUug-GUGGC------------UugCGUGUUGGC--CG- -5' |
|||||||
| 11641 | 5' | -52 | NC_003094.2 | + | 58581 | 1.13 | 0.003326 |
|
Target: 5'- aGUUCAACCACCGAACGCACAACCGGCa -3' miRNA: 3'- -CAAGUUGGUGGCUUGCGUGUUGGCCG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home