Results 1 - 5 of 5 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 11644 | 5' | -52.4 | NC_003094.2 | + | 45898 | 0.66 | 0.974266 |
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Target: 5'- uUCACUCGaUUGUGUGAcGUGAuauGGCuGUUCa -3' miRNA: 3'- -AGUGAGC-AACGCGCU-CGUU---UCG-CAGG- -5' |
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| 11644 | 5' | -52.4 | NC_003094.2 | + | 128429 | 0.67 | 0.954087 |
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Target: 5'- uUCACUUGUUcguugaGCGCGuuguuauuuuuGGCuAAAGCGUgCa -3' miRNA: 3'- -AGUGAGCAA------CGCGC-----------UCG-UUUCGCAgG- -5' |
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| 11644 | 5' | -52.4 | NC_003094.2 | + | 51204 | 0.68 | 0.935873 |
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Target: 5'- gCACggCGUucaucccgUGCGCGAugucgGCGGGcGCGUCCc -3' miRNA: 3'- aGUGa-GCA--------ACGCGCU-----CGUUU-CGCAGG- -5' |
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| 11644 | 5' | -52.4 | NC_003094.2 | + | 90925 | 0.68 | 0.930692 |
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Target: 5'- gUACUCGUcGC-CGAGCAugaccAGUGUCa -3' miRNA: 3'- aGUGAGCAaCGcGCUCGUu----UCGCAGg -5' |
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| 11644 | 5' | -52.4 | NC_003094.2 | + | 35990 | 1.14 | 0.002721 |
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Target: 5'- uUCACUCGUUGCGCGAGCAAAGCGUCCa -3' miRNA: 3'- -AGUGAGCAACGCGCUCGUUUCGCAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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