miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11653 3' -55.8 NC_003102.1 + 114496 0.66 0.918989
Target:  5'- aCGC-UUGAGCGUCGaucGUCuuugauCGCGCa -3'
miRNA:   3'- aGCGcAGCUCGCGGUa--CAGuu----GCGCG- -5'
11653 3' -55.8 NC_003102.1 + 27880 0.66 0.918989
Target:  5'- aUCGCaac---CGUCAUGUUGACGCGCa -3'
miRNA:   3'- -AGCGcagcucGCGGUACAGUUGCGCG- -5'
11653 3' -55.8 NC_003102.1 + 19440 0.66 0.918989
Target:  5'- aUCuCGUCGAGUcuguaGUCuUGUCGAUGCGa -3'
miRNA:   3'- -AGcGCAGCUCG-----CGGuACAGUUGCGCg -5'
11653 3' -55.8 NC_003102.1 + 28951 0.66 0.918989
Target:  5'- aUCGUGUCucuuugcGCGCuCAaGUCAcguagaaugcgGCGCGCg -3'
miRNA:   3'- -AGCGCAGcu-----CGCG-GUaCAGU-----------UGCGCG- -5'
11653 3' -55.8 NC_003102.1 + 72150 0.66 0.913212
Target:  5'- aUCGCGUCc-GCGaUCAUGUacugaAGCGCGa -3'
miRNA:   3'- -AGCGCAGcuCGC-GGUACAg----UUGCGCg -5'
11653 3' -55.8 NC_003102.1 + 63220 0.66 0.900951
Target:  5'- aUCGUGUCucGCGUCGaccGUUuGCGUGCg -3'
miRNA:   3'- -AGCGCAGcuCGCGGUa--CAGuUGCGCG- -5'
11653 3' -55.8 NC_003102.1 + 110391 0.66 0.894471
Target:  5'- aUCGCacacgaugaucUCGGGCGCguccacgauCAUGUCGACgGCGUg -3'
miRNA:   3'- -AGCGc----------AGCUCGCG---------GUACAGUUG-CGCG- -5'
11653 3' -55.8 NC_003102.1 + 121128 0.67 0.887761
Target:  5'- uUCGUGcCGGucGCGCCGUGUCcgcCGgGUu -3'
miRNA:   3'- -AGCGCaGCU--CGCGGUACAGuu-GCgCG- -5'
11653 3' -55.8 NC_003102.1 + 102565 0.67 0.880827
Target:  5'- cUUGCGUCGaAGUGaUCGUGUCGAUGaacaGUu -3'
miRNA:   3'- -AGCGCAGC-UCGC-GGUACAGUUGCg---CG- -5'
11653 3' -55.8 NC_003102.1 + 34480 0.67 0.858721
Target:  5'- cUCGaacuGUCGAcGCGCCGUcuaaacucGUUgaAACGCGCc -3'
miRNA:   3'- -AGCg---CAGCU-CGCGGUA--------CAG--UUGCGCG- -5'
11653 3' -55.8 NC_003102.1 + 40779 0.67 0.850936
Target:  5'- aUCGCGUUGAGUauGUCuccauUGUCGGCGUc- -3'
miRNA:   3'- -AGCGCAGCUCG--CGGu----ACAGUUGCGcg -5'
11653 3' -55.8 NC_003102.1 + 117927 0.68 0.826421
Target:  5'- aUGU-UCGAGU-CCAUGUCGcuaACGCGCa -3'
miRNA:   3'- aGCGcAGCUCGcGGUACAGU---UGCGCG- -5'
11653 3' -55.8 NC_003102.1 + 40322 0.68 0.817887
Target:  5'- cUCGCaaGUCGAacGCGCCGU-UCGGCG-GCa -3'
miRNA:   3'- -AGCG--CAGCU--CGCGGUAcAGUUGCgCG- -5'
11653 3' -55.8 NC_003102.1 + 15655 0.68 0.817887
Target:  5'- aUCGCGgCGAGaCGUCGUGUUggaGGCuaGCg -3'
miRNA:   3'- -AGCGCaGCUC-GCGGUACAG---UUGcgCG- -5'
11653 3' -55.8 NC_003102.1 + 40878 0.68 0.815293
Target:  5'- cUCGCGUCGucgaacgugaccagGGCGCC--GUCuuUGCGUc -3'
miRNA:   3'- -AGCGCAGC--------------UCGCGGuaCAGuuGCGCG- -5'
11653 3' -55.8 NC_003102.1 + 23779 0.69 0.785828
Target:  5'- aCGUGUCGAugGCGgcaucaauguccucuCCGUGUauaccgauggCGACGCGCa -3'
miRNA:   3'- aGCGCAGCU--CGC---------------GGUACA----------GUUGCGCG- -5'
11653 3' -55.8 NC_003102.1 + 13987 0.69 0.782149
Target:  5'- aCGUGUCc-GCGCaguuUGUUAAUGCGCu -3'
miRNA:   3'- aGCGCAGcuCGCGgu--ACAGUUGCGCG- -5'
11653 3' -55.8 NC_003102.1 + 19944 0.69 0.763438
Target:  5'- aCGCGugaaacUCG-GCGgCGUGUaCAugGCGCu -3'
miRNA:   3'- aGCGC------AGCuCGCgGUACA-GUugCGCG- -5'
11653 3' -55.8 NC_003102.1 + 100458 0.69 0.763438
Target:  5'- gCGCGUCGAGUuuuuugauucuGaCCGgcGUgAACGCGCu -3'
miRNA:   3'- aGCGCAGCUCG-----------C-GGUa-CAgUUGCGCG- -5'
11653 3' -55.8 NC_003102.1 + 128748 0.69 0.763438
Target:  5'- aCGCGUCugucuAGCGCgc--UCAACGCGCu -3'
miRNA:   3'- aGCGCAGc----UCGCGguacAGUUGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.