Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11653 | 3' | -55.8 | NC_003102.1 | + | 13987 | 0.69 | 0.782149 |
Target: 5'- aCGUGUCc-GCGCaguuUGUUAAUGCGCu -3' miRNA: 3'- aGCGCAGcuCGCGgu--ACAGUUGCGCG- -5' |
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11653 | 3' | -55.8 | NC_003102.1 | + | 102565 | 0.67 | 0.880827 |
Target: 5'- cUUGCGUCGaAGUGaUCGUGUCGAUGaacaGUu -3' miRNA: 3'- -AGCGCAGC-UCGC-GGUACAGUUGCg---CG- -5' |
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11653 | 3' | -55.8 | NC_003102.1 | + | 121128 | 0.67 | 0.887761 |
Target: 5'- uUCGUGcCGGucGCGCCGUGUCcgcCGgGUu -3' miRNA: 3'- -AGCGCaGCU--CGCGGUACAGuu-GCgCG- -5' |
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11653 | 3' | -55.8 | NC_003102.1 | + | 110391 | 0.66 | 0.894471 |
Target: 5'- aUCGCacacgaugaucUCGGGCGCguccacgauCAUGUCGACgGCGUg -3' miRNA: 3'- -AGCGc----------AGCUCGCG---------GUACAGUUG-CGCG- -5' |
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11653 | 3' | -55.8 | NC_003102.1 | + | 63220 | 0.66 | 0.900951 |
Target: 5'- aUCGUGUCucGCGUCGaccGUUuGCGUGCg -3' miRNA: 3'- -AGCGCAGcuCGCGGUa--CAGuUGCGCG- -5' |
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11653 | 3' | -55.8 | NC_003102.1 | + | 114496 | 0.66 | 0.918989 |
Target: 5'- aCGC-UUGAGCGUCGaucGUCuuugauCGCGCa -3' miRNA: 3'- aGCGcAGCUCGCGGUa--CAGuu----GCGCG- -5' |
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11653 | 3' | -55.8 | NC_003102.1 | + | 27880 | 0.66 | 0.918989 |
Target: 5'- aUCGCaac---CGUCAUGUUGACGCGCa -3' miRNA: 3'- -AGCGcagcucGCGGUACAGUUGCGCG- -5' |
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11653 | 3' | -55.8 | NC_003102.1 | + | 19440 | 0.66 | 0.918989 |
Target: 5'- aUCuCGUCGAGUcuguaGUCuUGUCGAUGCGa -3' miRNA: 3'- -AGcGCAGCUCG-----CGGuACAGUUGCGCg -5' |
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11653 | 3' | -55.8 | NC_003102.1 | + | 34480 | 0.67 | 0.858721 |
Target: 5'- cUCGaacuGUCGAcGCGCCGUcuaaacucGUUgaAACGCGCc -3' miRNA: 3'- -AGCg---CAGCU-CGCGGUA--------CAG--UUGCGCG- -5' |
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11653 | 3' | -55.8 | NC_003102.1 | + | 1274 | 0.71 | 0.674548 |
Target: 5'- aUCGCGUCGAGCGUgauagccgaaagCAgcgagGUCAuacgaaacaACGCGg -3' miRNA: 3'- -AGCGCAGCUCGCG------------GUa----CAGU---------UGCGCg -5' |
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11653 | 3' | -55.8 | NC_003102.1 | + | 128748 | 0.69 | 0.763438 |
Target: 5'- aCGCGUCugucuAGCGCgc--UCAACGCGCu -3' miRNA: 3'- aGCGCAGc----UCGCGguacAGUUGCGCG- -5' |
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11653 | 3' | -55.8 | NC_003102.1 | + | 17482 | 0.7 | 0.704812 |
Target: 5'- aUCGCGUCG-GCgGgUAUGUCGaugGCGgGCa -3' miRNA: 3'- -AGCGCAGCuCG-CgGUACAGU---UGCgCG- -5' |
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11653 | 3' | -55.8 | NC_003102.1 | + | 93548 | 0.7 | 0.72371 |
Target: 5'- uUCGUGUcuguacaCGAGCaCCGUGUCgAAUGUGCc -3' miRNA: 3'- -AGCGCA-------GCUCGcGGUACAG-UUGCGCG- -5' |
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11653 | 3' | -55.8 | NC_003102.1 | + | 20124 | 0.99 | 0.013433 |
Target: 5'- cUCGCGUCGAGCGCCAUGUacACGCGCg -3' miRNA: 3'- -AGCGCAGCUCGCGGUACAguUGCGCG- -5' |
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11653 | 3' | -55.8 | NC_003102.1 | + | 117927 | 0.68 | 0.826421 |
Target: 5'- aUGU-UCGAGU-CCAUGUCGcuaACGCGCa -3' miRNA: 3'- aGCGcAGCUCGcGGUACAGU---UGCGCG- -5' |
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11653 | 3' | -55.8 | NC_003102.1 | + | 133740 | 0.69 | 0.753905 |
Target: 5'- cCGCGUCGcAGcCGCCguaGUGUCGcCGCa- -3' miRNA: 3'- aGCGCAGC-UC-GCGG---UACAGUuGCGcg -5' |
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11653 | 3' | -55.8 | NC_003102.1 | + | 23779 | 0.69 | 0.785828 |
Target: 5'- aCGUGUCGAugGCGgcaucaauguccucuCCGUGUauaccgauggCGACGCGCa -3' miRNA: 3'- aGCGCAGCU--CGC---------------GGUACA----------GUUGCGCG- -5' |
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11653 | 3' | -55.8 | NC_003102.1 | + | 40878 | 0.68 | 0.815293 |
Target: 5'- cUCGCGUCGucgaacgugaccagGGCGCC--GUCuuUGCGUc -3' miRNA: 3'- -AGCGCAGC--------------UCGCGGuaCAGuuGCGCG- -5' |
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11653 | 3' | -55.8 | NC_003102.1 | + | 28951 | 0.66 | 0.918989 |
Target: 5'- aUCGUGUCucuuugcGCGCuCAaGUCAcguagaaugcgGCGCGCg -3' miRNA: 3'- -AGCGCAGcu-----CGCG-GUaCAGU-----------UGCGCG- -5' |
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11653 | 3' | -55.8 | NC_003102.1 | + | 72150 | 0.66 | 0.913212 |
Target: 5'- aUCGCGUCc-GCGaUCAUGUacugaAGCGCGa -3' miRNA: 3'- -AGCGCAGcuCGC-GGUACAg----UUGCGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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